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Classic and contemporary approaches to modeling biochemical reactions
Recent interest in modeling biochemical networks raises questions about the relationship
between often complex mathematical models and familiar arithmetic concepts from classical …
between often complex mathematical models and familiar arithmetic concepts from classical …
Multisite protein phosphorylation–from molecular mechanisms to kinetic models
C Salazar, T Höfer - The FEBS journal, 2009 - Wiley Online Library
Multisite phosphorylation is an important mechanism for fine‐tuned regulation of protein
function. Mathematical models developed over recent years have contributed to elucidation …
function. Mathematical models developed over recent years have contributed to elucidation …
Beyond the Michaelis-Menten equation: Accurate and efficient estimation of enzyme kinetic parameters
Examining enzyme kinetics is critical for understanding cellular systems and for using
enzymes in industry. The Michaelis-Menten equation has been widely used for over a …
enzymes in industry. The Michaelis-Menten equation has been widely used for over a …
Modular cell biology: retroactivity and insulation
Modularity plays a fundamental role in the prediction of the behavior of a system from the
behavior of its components, guaranteeing that the properties of individual components do …
behavior of its components, guaranteeing that the properties of individual components do …
[PDF][PDF] The meshless local Petrov-Galerkin (MLPG) method: a simple & less-costly alternative to the finite element and boundary element methods
S Shen, SN Atluri - Computer Modeling in Engineering & Sciences, 2002 - Citeseer
A comparison study of the efficiency and accuracy of a variety of meshless trial and test
functions is presented in this paper, based on the general concept of the meshless local …
functions is presented in this paper, based on the general concept of the meshless local …
Validity of the Michaelis–Menten equation–steady‐state or reactant stationary assumption: that is the question
S Schnell - The FEBS journal, 2014 - Wiley Online Library
The Michaelis–Menten equation is generally used to estimate the kinetic parameters, V and
KM, when the steady‐state assumption is valid. Following a brief overview of the derivation …
KM, when the steady‐state assumption is valid. Following a brief overview of the derivation …
Internal coarse-graining of molecular systems
Modelers of molecular signaling networks must cope with the combinatorial explosion of
protein states generated by posttranslational modifications and complex formation. Rule …
protein states generated by posttranslational modifications and complex formation. Rule …
The cell cycle switch computes approximate majority
Both computational and biological systems have to make decisions about switching from
one state to another. The 'Approximate Majority'computational algorithm provides the …
one state to another. The 'Approximate Majority'computational algorithm provides the …
Misuse of the Michaelis–Menten rate law for protein interaction networks and its remedy
For over a century, the Michaelis–Menten (MM) rate law has been used to describe the rates
of enzyme-catalyzed reactions and gene expression. Despite the ubiquity of the MM rate …
of enzyme-catalyzed reactions and gene expression. Despite the ubiquity of the MM rate …
[LIBRO][B] Modeling biomolecular networks in cells: structures and dynamics
Taking ideas from nature has been a theme of humanity's technological progress but it is
only our newfound expertise in molecular manipulation and complex nonlinear dynamics …
only our newfound expertise in molecular manipulation and complex nonlinear dynamics …