An ontology-based knowledge graph for representing interactions involving RNA molecules

E Cavalleri, A Cabri, M Soto-Gomez, S Bonfitto… - Scientific Data, 2024 - nature.com
The “RNA world” represents a novel frontier for the study of fundamental biological
processes and human diseases and is paving the way for the development of new drugs …

Evaluating class membership relations in knowledge graphs using large language models

BP Allen, PT Groth - European Semantic Web Conference, 2024 - Springer
A backbone of knowledge graphs are their class membership relations, which assign
entities to a given class. As part of the knowledge engineering process, we propose a new …

FoodAtlas: automated knowledge extraction of food and chemicals from literature

J Youn, F Li, G Simmons, S Kim… - Computers in Biology and …, 2024 - Elsevier
Automated generation of knowledge graphs that accurately capture published information
can help with knowledge organization and access, which have the potential to accelerate …

[HTML][HTML] On measuring inconsistency in graph databases with regular path constraints

J Grant, F Parisi - Artificial Intelligence, 2024 - Elsevier
Real-world data are often inconsistent. Although a substantial amount of research has been
done on measuring inconsistency, this research concentrated on knowledge bases …

RNA-KG: An ontology-based knowledge graph for representing interactions involving RNA molecules

E Cavalleri, A Cabri, M Soto-Gomez, S Bonfitto… - arxiv preprint arxiv …, 2023 - arxiv.org
The" RNA world" represents a novel frontier for the study of fundamental biological
processes and human diseases and is paving the way for the development of new drugs …

A Language Model Based Framework for New Concept Placement in Ontologies

H Dong, J Chen, Y He, Y Gao, I Horrocks - European Semantic Web …, 2024 - Springer
We investigate the task of inserting new concepts extracted from texts into an ontology using
language models. We explore an approach with three steps: edge search which is to find a …

Framework for human–XAI symbiosis: extended self from the dual-process theory perspective

Y Litvinova, P Mikalef, X Luo - Journal of Business Analytics, 2024 - Taylor & Francis
The use of artificial intelligence (AI)-based decision support systems (DSSs) is expected to
enable superior human–XAI performance. To enhance decision-making performance …

[HTML][HTML] Enhancing foundation models for scientific discovery via multimodal knowledge graph representations

V Lopez, L Hoang, M Martinez-Galindo… - Journal of Web …, 2025 - Elsevier
Abstract Foundation Models (FMs) hold transformative potential to accelerate scientific
discovery, yet reaching their full capacity in complex, highly multimodal domains such as …

[PDF][PDF] An ontology-based knowledge graph for representing interactions involving RNA

E Cavalleri, A Cabri, M Soto-Gomez - Scientific Data, 11 (1), 2024 - core.ac.uk
Emanuele Cavalleri 1, alberto Cabri1, Mauricio Soto-Gomez1, Sara Bonfitto1, Paolo
Perlasca1, Jessica Gliozzo 1, Tiffany J. Callahan 2, Justin Reese3, Peter N. Robinson 4, 5 …

[PDF][PDF] A language model based framework for new concept placement in ontologies

I Horrocks - 2024 - 2024.eswc-conferences.org
We investigate the task of inserting new concepts extracted from texts into an ontology using
language models. We explore an approach with three steps: edge search which is to find a …