The promise and the challenges of cryo‐electron tomography
M Turk, W Baumeister - FEBS letters, 2020 - Wiley Online Library
Structural biologists have traditionally approached cellular complexity in a reductionist
manner in which the cellular molecular components are fractionated and purified before …
manner in which the cellular molecular components are fractionated and purified before …
Cryo-electron tomography and subtomogram averaging
W Wan, JAG Briggs - Methods in enzymology, 2016 - Elsevier
Cryo-electron tomography (cryo-ET) allows 3D volumes to be reconstructed from a set of 2D
projection images of a tilted biological sample. It allows densities to be resolved in 3D that …
projection images of a tilted biological sample. It allows densities to be resolved in 3D that …
A Bayesian approach to single-particle electron cryo-tomography in RELION-4.0
We present a new approach for macromolecular structure determination from multiple
particles in electron cryo-tomography (cryo-ET) data sets. Whereas existing subtomogram …
particles in electron cryo-tomography (cryo-ET) data sets. Whereas existing subtomogram …
nextPYP: a comprehensive and scalable platform for characterizing protein variability in situ using single-particle cryo-electron tomography
Single-particle cryo-electron tomography is an emerging technique capable of determining
the structure of proteins imaged within the native context of cells at molecular resolution …
the structure of proteins imaged within the native context of cells at molecular resolution …
emClarity: software for high-resolution cryo-electron tomography and subtomogram averaging
BA Himes, P Zhang - Nature methods, 2018 - nature.com
Macromolecular complexes are intrinsically flexible and often challenging to purify for
structure determination by single-particle cryo-electron microscopy (cryo-EM). Such …
structure determination by single-particle cryo-electron microscopy (cryo-EM). Such …
Critical differences in 3D atomic structure of individual ligand-protected nanocrystals in solution
Precise three-dimensional (3D) atomic structure determination of individual nanocrystals is a
prerequisite for understanding and predicting their physical properties. Nanocrystals from …
prerequisite for understanding and predicting their physical properties. Nanocrystals from …
MiLoPYP: self-supervised molecular pattern mining and particle localization in situ
Cryo-electron tomography allows the routine visualization of cellular landscapes in three
dimensions at nanometer-range resolutions. When combined with single-particle …
dimensions at nanometer-range resolutions. When combined with single-particle …
High-throughput cryo-ET structural pattern mining by unsupervised deep iterative subtomogram clustering
Cryoelectron tomography directly visualizes heterogeneous macromolecular structures in
their native and complex cellular environments. However, existing computer-assisted …
their native and complex cellular environments. However, existing computer-assisted …
Dynamo: a flexible, user-friendly development tool for subtomogram averaging of cryo-EM data in high-performance computing environments
Dynamo is a new software package for subtomogram averaging of cryo Electron
Tomography (cryo-ET) data with three main goals: first, Dynamo allows user-transparent …
Tomography (cryo-ET) data with three main goals: first, Dynamo allows user-transparent …
Molecular architecture of native HIV-1 gp120 trimers
The envelope glycoproteins (Env) of human and simian immunodeficiency viruses (HIV and
SIV, respectively) mediate virus binding to the cell surface receptor CD4 on target cells to …
SIV, respectively) mediate virus binding to the cell surface receptor CD4 on target cells to …