The emergence and influence of internal states

SW Flavell, N Gogolla, M Lovett-Barron, M Zelikowsky - Neuron, 2022 - cell.com
Animal behavior is shaped by a variety of" internal states"—partially hidden variables that
profoundly shape perception, cognition, and action. The neural basis of internal states, such …

Quantifying behavior to understand the brain

TD Pereira, JW Shaevitz, M Murthy - Nature neuroscience, 2020 - nature.com
Over the past years, numerous methods have emerged to automate the quantification of
animal behavior at a resolution not previously imaginable. This has opened up a new field of …

Keypoint-MoSeq: parsing behavior by linking point tracking to pose dynamics

C Weinreb, JE Pearl, S Lin, MAM Osman, L Zhang… - Nature …, 2024 - nature.com
Keypoint tracking algorithms can flexibly quantify animal movement from videos obtained in
a wide variety of settings. However, it remains unclear how to parse continuous keypoint …

DeepPoseKit, a software toolkit for fast and robust animal pose estimation using deep learning

JM Graving, D Chae, H Naik, L Li, B Koger… - elife, 2019 - elifesciences.org
Quantitative behavioral measurements are important for answering questions across
scientific disciplines—from neuroscience to ecology. State-of-the-art deep-learning methods …

Computational neuroethology: a call to action

SR Datta, DJ Anderson, K Branson, P Perona, A Leifer - Neuron, 2019 - cell.com
The brain is worthy of study because it is in charge of behavior. A flurry of recent technical
advances in measuring and quantifying naturalistic behaviors provide an important …

Fast animal pose estimation using deep neural networks

TD Pereira, DE Aldarondo, L Willmore, M Kislin… - Nature …, 2019 - nature.com
The need for automated and efficient systems for tracking full animal pose has increased
with the complexity of behavioral data and analyses. Here we introduce LEAP (LEAP …

Finding, visualizing, and quantifying latent structure across diverse animal vocal repertoires

T Sainburg, M Thielk, TQ Gentner - PLoS computational biology, 2020 - journals.plos.org
Animals produce vocalizations that range in complexity from a single repeated call to
hundreds of unique vocal elements patterned in sequences unfolding over hours …

B-SOiD, an open-source unsupervised algorithm for identification and fast prediction of behaviors

AI Hsu, EA Yttri - Nature communications, 2021 - nature.com
Studying naturalistic animal behavior remains a difficult objective. Recent machine learning
advances have enabled limb localization; however, extracting behaviors requires …

Unsupervised identification of the internal states that shape natural behavior

AJ Calhoun, JW Pillow, M Murthy - Nature neuroscience, 2019 - nature.com
Internal states shape stimulus responses and decision-making, but we lack methods to
identify them. To address this gap, we developed an unsupervised method to identify …

Emerging technologies for behavioral research in changing environments

ID Couzin, C Heins - Trends in Ecology & Evolution, 2023 - cell.com
The first response exhibited by animals to changing environments is typically behavioral.
Behavior is thus central to predicting, and mitigating, the impacts that natural and …