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The emergence and influence of internal states
Animal behavior is shaped by a variety of" internal states"—partially hidden variables that
profoundly shape perception, cognition, and action. The neural basis of internal states, such …
profoundly shape perception, cognition, and action. The neural basis of internal states, such …
Quantifying behavior to understand the brain
Over the past years, numerous methods have emerged to automate the quantification of
animal behavior at a resolution not previously imaginable. This has opened up a new field of …
animal behavior at a resolution not previously imaginable. This has opened up a new field of …
Keypoint-MoSeq: parsing behavior by linking point tracking to pose dynamics
Keypoint tracking algorithms can flexibly quantify animal movement from videos obtained in
a wide variety of settings. However, it remains unclear how to parse continuous keypoint …
a wide variety of settings. However, it remains unclear how to parse continuous keypoint …
DeepPoseKit, a software toolkit for fast and robust animal pose estimation using deep learning
Quantitative behavioral measurements are important for answering questions across
scientific disciplines—from neuroscience to ecology. State-of-the-art deep-learning methods …
scientific disciplines—from neuroscience to ecology. State-of-the-art deep-learning methods …
Computational neuroethology: a call to action
The brain is worthy of study because it is in charge of behavior. A flurry of recent technical
advances in measuring and quantifying naturalistic behaviors provide an important …
advances in measuring and quantifying naturalistic behaviors provide an important …
Fast animal pose estimation using deep neural networks
The need for automated and efficient systems for tracking full animal pose has increased
with the complexity of behavioral data and analyses. Here we introduce LEAP (LEAP …
with the complexity of behavioral data and analyses. Here we introduce LEAP (LEAP …
Finding, visualizing, and quantifying latent structure across diverse animal vocal repertoires
Animals produce vocalizations that range in complexity from a single repeated call to
hundreds of unique vocal elements patterned in sequences unfolding over hours …
hundreds of unique vocal elements patterned in sequences unfolding over hours …
B-SOiD, an open-source unsupervised algorithm for identification and fast prediction of behaviors
Studying naturalistic animal behavior remains a difficult objective. Recent machine learning
advances have enabled limb localization; however, extracting behaviors requires …
advances have enabled limb localization; however, extracting behaviors requires …
Unsupervised identification of the internal states that shape natural behavior
Internal states shape stimulus responses and decision-making, but we lack methods to
identify them. To address this gap, we developed an unsupervised method to identify …
identify them. To address this gap, we developed an unsupervised method to identify …
Emerging technologies for behavioral research in changing environments
The first response exhibited by animals to changing environments is typically behavioral.
Behavior is thus central to predicting, and mitigating, the impacts that natural and …
Behavior is thus central to predicting, and mitigating, the impacts that natural and …