Coordinating cell proliferation and differentiation: Antagonism between cell cycle regulators and cell type-specific gene expression

S Ruijtenberg, S van den Heuvel - Cell cycle, 2016 - Taylor & Francis
Cell proliferation and differentiation show a remarkable inverse relationship. Precursor cells
continue division before acquiring a fully differentiated state, while terminal differentiation …

Next-generation proteomics: towards an integrative view of proteome dynamics

AFM Altelaar, J Munoz, AJR Heck - Nature Reviews Genetics, 2013 - nature.com
Next-generation sequencing allows the analysis of genomes, including those representing
disease states. However, the causes of most disorders are multifactorial, and systems-level …

[HTML][HTML] Long noncoding RNAs with enhancer-like function in human cells

UA Ørom, T Derrien, M Beringer, K Gumireddy… - Cell, 2010 - cell.com
While the long noncoding RNAs (ncRNAs) constitute a large portion of the mammalian
transcriptome, their biological functions has remained elusive. A few long ncRNAs that have …

[HTML][HTML] Chromatin fibers are formed by heterogeneous groups of nucleosomes in vivo

MA Ricci, C Manzo, MF García-Parajo, M Lakadamyali… - Cell, 2015 - cell.com
Nucleosomes help structure chromosomes by compacting DNA into fibers. To gain insight
into how nucleosomes are arranged in vivo, we combined quantitative super-resolution …

Chromatin modifiers and remodellers: regulators of cellular differentiation

T Chen, SYR Dent - Nature Reviews Genetics, 2014 - nature.com
Cellular differentiation is, by definition, epigenetic. Genome-wide profiling of pluripotent cells
and differentiated cells suggests global chromatin remodelling during differentiation, which …

[HTML][HTML] The transcriptional and epigenomic foundations of ground state pluripotency

H Marks, T Kalkan, R Menafra, S Denissov, K Jones… - Cell, 2012 - cell.com
Mouse embryonic stem (ES) cells grown in serum exhibit greater heterogeneity in
morphology and expression of pluripotency factors than ES cells cultured in defined medium …

Molecular maps of the reorganization of genome-nuclear lamina interactions during differentiation

D Peric-Hupkes, W Meuleman, L Pagie… - Molecular cell, 2010 - cell.com
The three-dimensional organization of chromosomes within the nucleus and its dynamics
during differentiation are largely unknown. To visualize this process in molecular detail, we …

H3K9me3-dependent heterochromatin: barrier to cell fate changes

JS Becker, D Nicetto, KS Zaret - Trends in Genetics, 2016 - cell.com
Establishing and maintaining cell identity depends on the proper regulation of gene
expression, as specified by transcription factors and reinforced by epigenetic mechanisms …

Regulation of long non-coding RNAs and genome dynamics by the RNA surveillance machinery

L Nair, H Chung, U Basu - Nature reviews Molecular cell biology, 2020 - nature.com
Much of the mammalian genome is transcribed, generating long non-coding RNAs
(lncRNAs) that can undergo post-transcriptional surveillance whereby only a subset of the …

Long noncoding RNAs in mouse embryonic stem cell pluripotency and differentiation

ME Dinger, PP Amaral, TR Mercer, KC Pang… - Genome …, 2008 - genome.cshlp.org
The transcriptional networks that regulate embryonic stem (ES) cell pluripotency and lineage
specification are the subject of considerable attention. To date such studies have focused …