Common principles and best practices for engineering microbiomes

CE Lawson, WR Harcombe, R Hatzenpichler… - Nature Reviews …, 2019 - nature.com
Despite broad scientific interest in harnessing the power of Earth's microbiomes, knowledge
gaps hinder their efficient use for addressing urgent societal and environmental challenges …

Raman microspectroscopy for microbiology

KS Lee, Z Landry, FC Pereira, M Wagner… - Nature Reviews …, 2021 - nature.com
Raman microspectroscopy offers microbiologists a rapid and non-destructive technique to
assess the chemical composition of individual live microorganisms in near real time. In this …

Critical review on biofilm methods

J Azeredo, NF Azevedo, R Briandet… - Critical reviews in …, 2017 - Taylor & Francis
Biofilms are widespread in nature and constitute an important strategy implemented by
microorganisms to survive in sometimes harsh environmental conditions. They can be …

Next-generation physiology approaches to study microbiome function at single cell level

R Hatzenpichler, V Krukenberg, RL Spietz… - Nature Reviews …, 2020 - nature.com
The function of cells in their native habitat often cannot be reliably predicted from genomic
data or from physiology studies of isolates. Traditional experimental approaches to study the …

Biodegradation of poly (butylene succinate) in soil laboratory incubations assessed by stable carbon isotope labelling

TF Nelson, R Baumgartner, M Jaggi… - Nature …, 2022 - nature.com
Using biodegradable instead of conventional plastics in agricultural applications promises to
help overcome plastic pollution of agricultural soils. However, analytical limitations impede …

Raman spectroscopy: techniques and applications in the life sciences

DW Shipp, F Sinjab, I Notingher - Advances in Optics and Photonics, 2017 - opg.optica.org
Raman spectroscopy is an increasingly popular technique in many areas, including biology
and medicine. It is based on Raman scattering, a phenomenon in which incident photons …

The chicken gastrointestinal microbiome

BB Oakley, HS Lillehoj, MH Kogut… - FEMS microbiology …, 2014 - academic.oup.com
The domestic chicken is a common model organism for human biological research and of
course also forms the basis of a global protein industry. Recent methodological advances …

Active microorganisms in soil: critical review of estimation criteria and approaches

E Blagodatskaya, Y Kuzyakov - Soil Biology and Biochemistry, 2013 - Elsevier
Microbial functioning refers to microbial activity because only the active microorganisms
drive biogeochemical processes. Despite the importance of active microorganisms, most …

Biodegradation of polymeric mulch films in agricultural soils: concepts, knowledge gaps, and future research directions

M Sander - Environmental science & technology, 2019 - ACS Publications
The agricultural use of conventional, polyethylene-based mulch films leads to the
accumulation of remnant film pieces in agricultural soils with negative impacts for soil …

The role of soil microbes in the global carbon cycle: tracking the below‐ground microbial processing of plant‐derived carbon for manipulating carbon dynamics in …

C Gougoulias, JM Clark, LJ Shaw - … of the Science of Food and …, 2014 - Wiley Online Library
It is well known that atmospheric concentrations of carbon dioxide (CO2)(and other
greenhouse gases) have increased markedly as a result of human activity since the …