Species-level paraphyly and polyphyly: frequency, causes, and consequences, with insights from animal mitochondrial DNA

DJ Funk, KE Omland - Annual Review of Ecology, Evolution …, 2003 - annualreviews.org
▪ Abstract Many uses of gene trees implicitly assume that nominal species are monophyletic
in their alleles at the study locus. However, in well-sampled gene trees, certain alleles in one …

Of glaciers and refugia: a decade of study sheds new light on the phylogeography of northwestern North America

ABA Shafer, CI Cullingham, SD Côté… - Molecular …, 2010 - Wiley Online Library
Glacial cycles have played a dominant role in sha** the genetic structure and distribution
of biota in northwestern North America. The two major ice age refugia of Beringia and the …

Identification of birds through DNA barcodes

PDN Hebert, MY Stoeckle, TS Zemlak, CM Francis - PLoS biology, 2004 - journals.plos.org
Short DNA sequences from a standardized region of the genome provide a DNA barcode for
identifying species. Compiling a public library of DNA barcodes linked to named specimens …

Quantitative criteria for species delimitation

JA Tobias, N Seddon, CN Spottiswoode, JD Pilgrim… - Ibis, 2010 - Wiley Online Library
Species are the fundamental units of biology, ecology and conservation, and progress in
these fields is therefore hampered by widespread taxonomic bias and uncertainty …

The impact of species concept on biodiversity studies

PM Agapow, ORP Bininda-Emonds*… - … quarterly review of …, 2004 - journals.uchicago.edu
Species are defined using a variety of different operational techniques. While discussion of
the various methodologies has previously been restricted mostly to taxonomists, the …

[LLIBRE][B] Bird coloration

GE Hill, KJ McGraw - 2006 - books.google.com
One cannot help being struck with wonder at the vivid pink of 10,000 flamingos rising from
Lake Nakuru or the glowing red gorget of a ruby-throated hummingbird feeding outside the …

Comprehensive DNA barcode coverage of North American birds

KCR Kerr, MY Stoeckle, CJ Dove… - Molecular ecology …, 2007 - Wiley Online Library
DNA barcoding seeks to assemble a standardized reference library for DNA‐based
identification of eukaryotic species. The utility and limitations of this approach need to be …

Mathematical consequences of the genealogical species concept

RR Hudson, JA Coyne - Evolution, 2002 - academic.oup.com
A genealogical species is defined as a basal group of organisms whose members are all
more closely related to each other than they are to any organisms outside the group …

Phylogenetics and speciation

TG Barraclough, S Nee - Trends in ecology & evolution, 2001 - cell.com
Species-level phylogenies derived from molecular data provide an indirect record of the
speciation events that have led to extant species. This offers enormous potential for …

Genomic evidence of speciation reversal in ravens

AM Kearns, M Restani, I Szabo… - Nature …, 2018 - nature.com
Many species, including humans, have emerged via complex reticulate processes involving
hybridisation. Under certain circumstances, hybridisation can cause distinct lineages to …