[HTML][HTML] High-content CRISPR screening

C Bock, P Datlinger, F Chardon, MA Coelho… - Nature Reviews …, 2022 - nature.com
CRISPR screens are a powerful source of biological discovery, enabling the unbiased
interrogation of gene function in a wide range of applications and species. In pooled …

Revolutionizing DNA repair research and cancer therapy with CRISPR–Cas screens

SW Awwad, A Serrano-Benitez, JC Thomas… - … Reviews Molecular Cell …, 2023 - nature.com
All organisms possess molecular mechanisms that govern DNA repair and associated DNA
damage response (DDR) processes. Owing to their relevance to human disease, most …

Actin cytoskeleton vulnerability to disulfide stress mediates disulfidptosis

X Liu, L Nie, Y Zhang, Y Yan, C Wang, M Colic… - Nature cell …, 2023 - nature.com
SLC7A11-mediated cystine uptake suppresses ferroptosis yet promotes cell death under
glucose starvation; the nature of the latter cell death remains unknown. Here we show that …

Chronos: a cell population dynamics model of CRISPR experiments that improves inference of gene fitness effects

JM Dempster, I Boyle, F Vazquez, DE Root, JS Boehm… - Genome biology, 2021 - Springer
CRISPR loss of function screens are powerful tools to interrogate biology but exhibit a
number of biases and artifacts that can confound the results. Here, we introduce Chronos …

Efficient gene knockout and genetic interaction screening using the in4mer CRISPR/Cas12a multiplex knockout platform

N Esmaeili Anvar, C Lin, X Ma, LL Wilson… - Nature …, 2024 - nature.com
Genetic interactions mediate the emergence of phenotype from genotype, but technologies
for combinatorial genetic perturbation in mammalian cells are challenging to scale. Here, we …

Functional genomic landscape of cancer-intrinsic evasion of killing by T cells

KA Lawson, CM Sousa, X Zhang, E Kim, R Akthar… - Nature, 2020 - nature.com
The genetic circuits that allow cancer cells to evade destruction by the host immune system
remain poorly understood,–. Here, to identify a phenotypically robust core set of genes and …

Transcription-coupled repair of DNA–protein cross-links depends on CSA and CSB

CJ Carnie, AC Acampora, AS Bader, C Erdenebat… - Nature Cell …, 2024 - nature.com
Covalent DNA–protein cross-links (DPCs) are toxic DNA lesions that block replication and
require repair by multiple pathways. Whether transcription blockage contributes to the …

Identification of early neurodegenerative pathways in progressive multiple sclerosis

M Kaufmann, AL Schaupp, R Sun, F Coscia… - Nature …, 2022 - nature.com
Progressive multiple sclerosis (MS) is characterized by unrelenting neurodegeneration,
which causes cumulative disability and is refractory to current treatments. Drug development …

A genetic map of the response to DNA damage in human cells

M Olivieri, T Cho, A Álvarez-Quilón, K Li… - Cell, 2020 - cell.com
The response to DNA damage is critical for cellular homeostasis, tumor suppression,
immunity, and gametogenesis. In order to provide an unbiased and global view of the DNA …

The shieldin complex mediates 53BP1-dependent DNA repair

SM Noordermeer, S Adam, D Setiaputra, M Barazas… - Nature, 2018 - nature.com
Abstract 53BP1 is a chromatin-binding protein that regulates the repair of DNA double-
strand breaks by suppressing the nucleolytic resection of DNA termini,. This function of …