Identification of neoantigens for individualized therapeutic cancer vaccines

F Lang, B Schrörs, M Löwer, Ö Türeci… - Nature reviews Drug …, 2022 - nature.com
Somatic mutations in cancer cells can generate tumour-specific neoepitopes, which are
recognized by autologous T cells in the host. As neoepitopes are not subject to central …

SARS-CoV-2 human T cell epitopes: Adaptive immune response against COVID-19

A Grifoni, J Sidney, R Vita, B Peters, S Crotty… - Cell host & …, 2021 - cell.com
Over the past year, numerous studies in the peer reviewed and preprint literature have
reported on the virological, epidemiological and clinical characteristics of the coronavirus …

[HTML][HTML] Challenges in neoantigen-directed therapeutics

L Lybaert, S Lefever, B Fant, E Smits, B De Geest… - Cancer Cell, 2023 - cell.com
A fundamental prerequisite for the efficacy of cancer immunotherapy is the presence of
functional, antigen-specific T cells within the tumor. Neoantigen-directed therapy is a …

T cell epitope predictions

B Peters, M Nielsen, A Sette - Annual Review of Immunology, 2020 - annualreviews.org
Throughout the body, T cells monitor MHC-bound ligands expressed on the surface of
essentially all cell types. MHC ligands that trigger a T cell immune response are referred to …

Machine learning techniques for the prediction of B-cell and T-cell epitopes as potential vaccine targets with a specific focus on SARS-CoV-2 pathogen: A review

SNH Bukhari, A Jain, E Haq, A Mehbodniya, J Webber - Pathogens, 2022 - mdpi.com
The only part of an antigen (a protein molecule found on the surface of a pathogen) that is
composed of epitopes specific to T and B cells is recognized by the human immune system …

Splicing neoantigen discovery with SNAF reveals shared targets for cancer immunotherapy

G Li, S Mahajan, S Ma, ED Jeffery, X Zhang… - Science Translational …, 2024 - science.org
Immunotherapy has emerged as a crucial strategy to combat cancer by “reprogramming” a
patient's own immune system. Although immunotherapy is typically reserved for patients with …

Neoplasia risk in patients with Lynch syndrome treated with immune checkpoint blockade

EC Harrold, MB Foote, B Rousseau, H Walch… - Nature Medicine, 2023 - nature.com
Metastatic and localized mismatch repair-deficient (dMMR) tumors are exquisitely sensitive
to immune checkpoint blockade (ICB). The ability of ICB to prevent dMMR malignant or pre …

Cancer neoantigens: challenges and future directions for prediction, prioritization, and validation

ES Borden, KH Buetow, MA Wilson… - Frontiers in oncology, 2022 - frontiersin.org
Prioritization of immunogenic neoantigens is key to enhancing cancer immunotherapy
through the development of personalized vaccines, adoptive T cell therapy, and the …

Artificial intelligence predicts the immunogenic landscape of SARS-CoV-2 leading to universal blueprints for vaccine designs

B Malone, B Simovski, C Moliné, J Cheng… - Scientific reports, 2020 - nature.com
The global population is at present suffering from a pandemic of Coronavirus disease 2019
(COVID-19), caused by the novel coronavirus Severe Acute Respiratory Syndrome …

Classical CD4 T cells as the cornerstone of antimycobacterial immunity

J Morgan, K Muskat, R Tippalagama… - Immunological …, 2021 - Wiley Online Library
Tuberculosis is a significant health problem without an effective vaccine to combat it. A
thorough understanding of the immune response and correlates of protection is needed to …