Machine learning bridges omics sciences and plant breeding

J Yan, X Wang - Trends in Plant Science, 2023 - cell.com
Some of the biological knowledge obtained from fundamental research will be implemented
in applied plant breeding. To bridge basic research and breeding practice, machine learning …

[HTML][HTML] Single-cell RNA sequencing of develo** maize ears facilitates functional analysis and trait candidate gene discovery

X Xu, M Crow, BR Rice, F Li, B Harris, L Liu… - Developmental Cell, 2021 - cell.com
Crop productivity depends on activity of meristems that produce optimized plant
architectures, including that of the maize ear. A comprehensive understanding of …

MaizeGDB 2018: the maize multi-genome genetics and genomics database

JL Portwood, MR Woodhouse, EK Cannon… - Nucleic acids …, 2019 - academic.oup.com
Since its 2015 update, MaizeGDB, the Maize Genetics and Genomics database, has
expanded to support the sequenced genomes of many maize inbred lines in addition to the …

Reconstructing the maize leaf regulatory network using ChIP-seq data of 104 transcription factors

X Tu, MK Mejía-Guerra, JA Valdes Franco… - Nature …, 2020 - nature.com
The transcription regulatory network inside a eukaryotic cell is defined by the combinatorial
actions of transcription factors (TFs). However, TF binding studies in plants are too few in …

Loss-of-function alleles of ZmPLD3 cause haploid induction in maize

Y Li, Z Lin, Y Yue, H Zhao, X Fei, LE, C Liu, S Chen… - Nature plants, 2021 - nature.com
Doubled haploid technology has been widely applied to multiple plant species and is
recognized as one of the most important technologies for improving crop breeding efficiency …

A pan-Zea genome map for enhancing maize improvement

S Gui, W Wei, C Jiang, J Luo, L Chen, S Wu, W Li… - Genome biology, 2022 - Springer
Abstract Background Maize (Zea mays L.) is at the vanguard facing the upcoming breeding
challenges. However, both a super pan-genome for the Zea genus and a comprehensive …