Weakly supervised histopathology image segmentation with self-attention

K Li, Z Qian, Y Han, I Eric, C Chang, B Wei, M Lai… - Medical Image …, 2023 - Elsevier
Accurate segmentation in histopathology images at pixel-level plays a critical role in the
digital pathology workflow. The development of weakly supervised methods for …

On supervised class-imbalanced learning: An updated perspective and some key challenges

S Das, SS Mullick, I Zelinka - IEEE Transactions on Artificial …, 2022 - ieeexplore.ieee.org
The problem of class imbalance has always been considered as a significant challenge to
traditional machine learning and the emerging deep learning research communities. A …

Transformer based multiple instance learning for weakly supervised histopathology image segmentation

Z Qian, K Li, M Lai, EIC Chang, B Wei, Y Fan… - … Conference on Medical …, 2022 - Springer
Hispathological image segmentation algorithms play a critical role in computer aided
diagnosis technology. The development of weakly supervised segmentation algorithm …

A CNN-based framework for estimation of root length, diameter, and color from in situ minirhizotron images

F Khoroshevsky, K Zhou, A Bar-Hillel, O Hadar… - … and Electronics in …, 2024 - Elsevier
This work presents a framework based on convolutional neural networks (CNNs) to estimate
root traits (length, diameter, and color) from minirhizotron (MR) imagery. The proposed …

Supervised and weakly supervised deep learning for segmentation and counting of cotton bolls using proximal imagery

S Adke, C Li, KM Rasheed, FW Maier - Sensors, 2022 - mdpi.com
The total boll count from a plant is one of the most important phenotypic traits for cotton
breeding and is also an important factor for growers to estimate the final yield. With the …

PRMI: A dataset of minirhizotron images for diverse plant root study

W Xu, G Yu, Y Cui, R Gloaguen, A Zare… - arxiv preprint arxiv …, 2022 - arxiv.org
Understanding a plant's root system architecture (RSA) is crucial for a variety of plant
science problem domains including sustainability and climate adaptation. Minirhizotron …

Tracking growth and decay of plant roots in minirhizotron images

A Gillert, B Peters, UF Von Lukas… - Proceedings of the …, 2023 - openaccess.thecvf.com
Plant roots are difficult to monitor and study since they are hidden belowground.
Minirhizotrons offer an in-situ monitoring solution but their widespread adoption is still …

Perennial grass root system specializes for multiple resource acquisitions with differential elongation and branching patterns

NT Glass, K Yun, EA Dias de Oliveira, A Zare… - Frontiers in Plant …, 2023 - frontiersin.org
Roots optimize the acquisition of limited soil resources, but relationships between root forms
and functions have often been assumed rather than demonstrated. Furthermore, how root …

Identification and measurement of individual roots in minirhizotron images of dense root systems

A Gillert, B Peters, UF von Lukas… - Proceedings of the …, 2021 - openaccess.thecvf.com
Semantic segmentation networks are prone to oversegmentation in areas where objects are
tightly clustered. In minirhizotron images with densely packed plant root systems this can …

Spatial and texture analysis of root system distribution with earth mover's distance (STARSEED)

J Peeples, W Xu, R Gloaguen, D Rowland, A Zare… - Plant Methods, 2023 - Springer
Purpose Root system architectures are complex and challenging to characterize effectively
for agronomic and ecological discovery. Methods We propose a new method, Spatial and …