[HTML][HTML] Soil quality–A critical review

EK Bünemann, G Bongiorno, Z Bai, RE Creamer… - Soil biology and …, 2018 - Elsevier
Sampling and analysis or visual examination of soil to assess its status and use potential is
widely practiced from plot to national scales. However, the choice of relevant soil attributes …

[HTML][HTML] The landscape ecology and microbiota of the human nose, mouth, and throat

DM Proctor, DA Relman - Cell host & microbe, 2017 - cell.com
Landscape ecology examines the relationships between the spatial arrangement of different
landforms and the processes that give rise to spatial and temporal patterns in local …

HPOBench: A collection of reproducible multi-fidelity benchmark problems for HPO

K Eggensperger, P Müller, N Mallik, M Feurer… - arxiv preprint arxiv …, 2021 - arxiv.org
To achieve peak predictive performance, hyperparameter optimization (HPO) is a crucial
component of machine learning and its applications. Over the last years, the number of …

Commensals suppress intestinal epithelial cell retinoic acid synthesis to regulate interleukin-22 activity and prevent microbial dysbiosis

M Grizotte-Lake, G Zhong, K Duncan, J Kirkwood… - Immunity, 2018 - cell.com
Retinoic acid (RA), a vitamin A metabolite, regulates transcriptional programs that drive
protective or pathogenic immune responses in the intestine, in a manner dependent on RA …

Harnessing intestinal tryptophan catabolism to relieve atherosclerosis in mice

M Chajadine, L Laurans, T Radecke… - Nature …, 2024 - nature.com
Tryptophan (Trp) is an essential amino acid, whose metabolism is a key gatekeeper of
intestinal homeostasis. Yet, its systemic effects, particularly on atherosclerosis, remain …

Beyond subjective and objective in statistics

A Gelman, C Hennig - Journal of the Royal Statistical Society …, 2017 - academic.oup.com
Decisions in statistical data analysis are often justified, criticized or avoided by using
concepts of objectivity and subjectivity. We argue that the words 'objective'and 'subjective'in …

Fifty important research questions in microbial ecology

RE Antwis, SM Griffiths, XA Harrison… - FEMS Microbiology …, 2017 - academic.oup.com
Microbial ecology provides insights into the ecological and evolutionary dynamics of
microbial communities underpinning every ecosystem on Earth. Microbial communities can …

Optimizing the quality of clinical studies on oral microbiome: A practical guide for planning, performing, and reporting

E Zaura, VY Pappalardo, MJ Buijs… - Periodontology …, 2021 - Wiley Online Library
With this review, we aim to increase the quality standards for clinical studies with
microbiome as an output parameter. We critically address the existing body of evidence for …

Critical review of 16S rRNA gene sequencing workflow in microbiome studies: From primer selection to advanced data analysis

A Regueira‐Iglesias, C Balsa‐Castro… - Molecular Oral …, 2023 - Wiley Online Library
The multi‐batch reanalysis approach of jointly reevaluating gene/genome sequences from
different works has gained particular relevance in the literature in recent years. The large …

Emerging concepts and challenges in implementing the exposome paradigm in allergic diseases and asthma: a Practall document

I Agache, R Miller, JE Gern, PW Hellings, M Jutel… - Allergy, 2019 - Wiley Online Library
Exposome research can improve the understanding of the mechanistic connections
between exposures and health to help mitigate adverse health outcomes across the life …