Fishing for fish environmental DNA: Ecological applications, methodological considerations, surveying designs, and ways forward

M Yao, S Zhang, Q Lu, X Chen, SY Zhang… - Molecular …, 2022 - Wiley Online Library
Vast global declines of freshwater and marine fish diversity and population abundance pose
serious threats to both ecosystem sustainability and human livelihoods. Environmental DNA …

Environmental DNA metabarcoding: A novel method for biodiversity monitoring of marine fish communities

M Miya - Annual Review of Marine Science, 2022 - annualreviews.org
Environmental DNA (eDNA) is genetic material that has been shed from macroorganisms. It
has received increased attention as an indirect marker for biodiversity monitoring. This …

Meta‐analysis shows both congruence and complementarity of DNA and eDNA metabarcoding to traditional methods for biological community assessment

F Keck, RC Blackman, R Bossart… - Molecular …, 2022 - Wiley Online Library
DNA metabarcoding is increasingly used for the assessment of aquatic communities, and
numerous studies have investigated the consistency of this technique with traditional …

Comparing eDNA metabarcoding primers for assessing fish communities in a biodiverse estuary

G Kumar, AM Reaume, E Farrell, MR Gaither - PloS one, 2022 - journals.plos.org
Metabarcoding of environmental DNA is increasingly used for biodiversity assessments in
aquatic communities. The efficiency and outcome of these efforts are dependent upon either …

Environmental DNA for biomonitoring

J Pawlowski, A Bonin, F Boyer, T Cordier… - Molecular …, 2021 - pmc.ncbi.nlm.nih.gov
The second series of papers concerns the use of eDNA to monitor fish diversity. We focus on
fish because they are among the most important groups of bioindicators and also because …

Benchmarking bioinformatic tools for fast and accurate eDNA metabarcoding species identification

L Mathon, A Valentini, PE Guérin… - Molecular Ecology …, 2021 - Wiley Online Library
Bioinformatic analysis of eDNA metabarcoding data is a crucial step toward rigorously
assessing biodiversity. Many programs are now available for each step of the required …

Large‐scale eDNA metabarcoding survey reveals marine biogeographic break and transitions over tropical north‐western Australia

K West, MJ Travers, M Stat, ES Harvey… - Diversity and …, 2021 - Wiley Online Library
Abstract Aim Environmental DNA (eDNA) metabarcoding has demonstrated its applicability
as a highly sensitive biomonitoring tool across small spatial and temporal scales in marine …

Combining environmental DNA and visual surveys can inform conservation planning for coral reefs

D Muenzel, A Bani, M De Brauwer, E Stewart… - Proceedings of the …, 2024 - pnas.org
Environmental DNA (eDNA) metabarcoding has the potential to revolutionize conservation
planning by providing spatially and taxonomically comprehensive data on biodiversity and …

Cross-ocean patterns and processes in fish biodiversity on coral reefs through the lens of eDNA metabarcoding

L Mathon, V Marques, D Mouillot… - … of the Royal …, 2022 - royalsocietypublishing.org
Increasing speed and magnitude of global change threaten the world's biodiversity and
particularly coral reef fishes. A better understanding of large-scale patterns and processes …

[HTML][HTML] Comparison of environmental DNA metabarcoding and bottom trawling for detecting seasonal fish communities and habitat preference in a highly disturbed …

P Jiang, S Zhang, S Xu, P **ong, Y Cao, Z Chen… - Ecological Indicators, 2023 - Elsevier
Environmental DNA (eDNA) metabarcoding has been used to study fish diversity in various
aquatic ecosystems. However, studies on fish community structure in estuarine ecosystems …