Transforming medical imaging with Transformers? A comparative review of key properties, current progresses, and future perspectives

J Li, J Chen, Y Tang, C Wang, BA Landman… - Medical image …, 2023 - Elsevier
Transformer, one of the latest technological advances of deep learning, has gained
prevalence in natural language processing or computer vision. Since medical imaging bear …

Linking interindividual variability in brain structure to behaviour

S Genon, SB Eickhoff, S Kharabian - Nature Reviews Neuroscience, 2022 - nature.com
What are the brain structural correlates of interindividual differences in behaviour? More
than a decade ago, advances in structural MRI opened promising new avenues to address …

Neuromaps: structural and functional interpretation of brain maps

RD Markello, JY Hansen, ZQ Liu, V Bazinet, G Shafiei… - Nature …, 2022 - nature.com
Imaging technologies are increasingly used to generate high-resolution reference maps of
brain structure and function. Comparing experimentally generated maps to these reference …

Global waves synchronize the brain's functional systems with fluctuating arousal

RV Raut, AZ Snyder, A Mitra, D Yellin, N Fujii… - Science …, 2021 - science.org
We propose and empirically support a parsimonious account of intrinsic, brain-wide
spatiotemporal organization arising from traveling waves linked to arousal. We hypothesize …

Voxelmorph: a learning framework for deformable medical image registration

G Balakrishnan, A Zhao, MR Sabuncu… - IEEE transactions on …, 2019 - ieeexplore.ieee.org
We present VoxelMorph, a fast learning-based framework for deformable, pairwise medical
image registration. Traditional registration methods optimize an objective function for each …

[HTML][HTML] SynthSeg: Segmentation of brain MRI scans of any contrast and resolution without retraining

B Billot, DN Greve, O Puonti, A Thielscher… - Medical image …, 2023 - Elsevier
Despite advances in data augmentation and transfer learning, convolutional neural
networks (CNNs) difficultly generalise to unseen domains. When segmenting brain scans …

Data augmentation using learned transformations for one-shot medical image segmentation

A Zhao, G Balakrishnan, F Durand… - Proceedings of the …, 2019 - openaccess.thecvf.com
Image segmentation is an important task in many medical applications. Methods based on
convolutional neural networks attain state-of-the-art accuracy; however, they typically rely on …

Unsupervised learning of probabilistic diffeomorphic registration for images and surfaces

AV Dalca, G Balakrishnan, J Guttag, MR Sabuncu - Medical image analysis, 2019 - Elsevier
Classical deformable registration techniques achieve impressive results and offer a rigorous
theoretical treatment, but are computationally intensive since they solve an optimization …

Local-global parcellation of the human cerebral cortex from intrinsic functional connectivity MRI

A Schaefer, R Kong, EM Gordon, TO Laumann… - Cerebral …, 2018 - academic.oup.com
A central goal in systems neuroscience is the parcellation of the cerebral cortex into discrete
neurobiological “atoms”. Resting-state functional magnetic resonance imaging (rs-fMRI) …

An unsupervised learning model for deformable medical image registration

G Balakrishnan, A Zhao, MR Sabuncu… - Proceedings of the …, 2018 - openaccess.thecvf.com
We present a fast learning-based algorithm for deformable, pairwise 3D medical image
registration. Current registration methods optimize an objective function independently for …