Conserved enhancers control notochord expression of vertebrate Brachyury

CL Kemmler, J Smolikova, HR Moran… - Nature …, 2023 - nature.com
The cell type-specific expression of key transcription factors is central to development and
disease. Brachyury/T/TBXT is a major transcription factor for gastrulation, tailbud patterning …

ORTHOSCOPE: an automatic web tool for phylogenetically inferring bilaterian orthogroups with user-selected taxa

J Inoue, N Satoh - Molecular biology and evolution, 2019 - academic.oup.com
Identification of orthologous or paralogous relationships of coding genes is fundamental to
all aspects of comparative genomics. For accurate identification of orthologs among deeply …

A Preliminary Single-Cell RNA-Seq Analysis of Embryonic Cells That Express Brachyury in the Amphioxus, Branchiostoma japonicum

N Satoh, H Tominaga, M Kiyomoto, K Hisata… - Frontiers in cell and …, 2021 - frontiersin.org
Among chordate taxa, the cephalochordates diverged earlier than urochordates and
vertebrates; thus, they retain unique, primitive developmental features. In particular, the …

Functions of the FGF signalling pathway in cephalochordates provide insight into the evolution of the prechordal plate

L Meister, H Escriva, S Bertrand - Development, 2022 - journals.biologists.com
The fibroblast growth factor (FGF) signalling pathway plays various roles during vertebrate
embryogenesis, from mesoderm formation to brain patterning. This diversity of functions …

The evolutionary history of Brachyury genes in Hydrozoa involves duplications, divergence, and neofunctionalization

AA Vetrova, DM Kupaeva, A Kizenko, TS Lebedeva… - Scientific Reports, 2023 - nature.com
Brachyury, a member of T-box gene family, is widely known for its major role in mesoderm
specification in bilaterians. It is also present in non-bilaterian metazoans, such as …

Differential expression pattern of two Brachyury genes in amphioxus embryos

L Yuan, Y Wang, G Li - Gene Expression Patterns, 2020 - Elsevier
Cephalochordate amphioxus contain two Brachyury genes (AmphiBra1 and AmphiBra2).
Using probes from the highly conserved coding regions, a summation of their expression …

Deuterostome genomics: lineage-specific protein expansions that enabled chordate muscle evolution

J Inoue, N Satoh - Molecular Biology and Evolution, 2018 - academic.oup.com
Fish-like larvae were foundational to the chordate body plan, given the basal placement of
free-living lancelets. That body plan probably made it possible for chordate ancestors to …

Amphioxus Sp5 is a member of a conserved Specificity Protein complement and is modulated by Wnt/β-catenin signalling

SC Dailey, I Kozmikova… - The International journal …, 2017 - pmc.ncbi.nlm.nih.gov
A cluster of three Specificity Protein (Sp) genes (Sp1-4, Sp5 and Sp6-9) is thought to be
ancestral in both chordates and the wider Eumetazoa. Sp5 and Sp6-9 gene groups are …

Deep homology of a brachyury regulatory syntax and origin of the notochord

TP Fan, JR Lee, CY Lin, YC Chen, AE Cutting… - bioRxiv, 2024 - biorxiv.org
The brachyury gene encodes a T-box transcription factor (TF) that is crucial for the
development of the notochord, a novel trait of chordates. Brachyury expression in axial …

Transcriptomic evidence for Brachyury expression in the caudal tip region of adult Ptychodera flava (Hemichordata)

A Arimoto, K Nishitsuji, K Hisata… - Development, Growth …, 2023 - Wiley Online Library
Most metazoans have a single copy of the T‐box transcription factor gene Brachyury. This
gene is expressed in cells of the blastopore of late blastulae and the archenteron …