Repeated plague infections across six generations of Neolithic Farmers

FV Seersholm, KG Sjögren, J Koelman, M Blank… - Nature, 2024 - nature.com
In the period between 5,300 and 4,900 calibrated years before present (cal. bp), populations
across large parts of Europe underwent a period of demographic decline,. However, the …

Ancient DNA reveals evolutionary origins of autoimmune diseases

W Barrie, EK Irving-Pease, E Willerslev… - Nature Reviews …, 2024 - nature.com
Most autoimmune diseases are caused by the interplay between common genetic risk
variants and environmental factors. New studies of ancient genomes suggest that many of …

CarpeDeam: A De Novo Metagenome Assembler for Heavily Damaged Ancient Datasets

L Kraft, J Söding, M Steinegger, A Jochheim… - bioRxiv, 2024 - biorxiv.org
De novo assembly of ancient metagenomic datasets is a challenging task. Ultra-short
fragment size and characteristic postmortem damage patterns of sequenced ancient DNA …

Bronze Age Yersinia pestis genome from sheep sheds light on hosts and evolution of a prehistoric plague lineage

I Light-Maka, TR Hermes, RA Bianco, L Semerau… - bioRxiv, 2025 - biorxiv.org
Most human pathogens are of zoonotic origin. Many emerged during prehistory, coinciding
with domestication providing more opportunities for spillover from original host species …

Ancient Borrelia genomes document the evolutionary history of louse-borne relapsing fever

P Swali, T Booth, CCS Tan, J McCabe, K Anastasiadou… - bioRxiv, 2024 - biorxiv.org
Several disease-causing bacteria have transitioned from tick-borne to louse-borne
transmission, a process associated with increased virulence and genome reduction …

Lethal Plague Outbreaks in Lake Baikal Hunter–gatherers 5500 Years Ago

R Macleod, F Seersholm, B de Sanctis, A Lieverse… - bioRxiv, 2024 - biorxiv.org
The rise of zoonotic diseases in prehistory is often associated with the Neolithic agricultural
transition,. In particular, plague has been linked to population declines in Late Neolithic …

Digesting the data: Proper validation in ancient metagenomic studies is essential

AL Pach, LT Lanigan, J Niemann, MW Pedersen… - bioRxiv, 2024 - biorxiv.org
In a recent publication in this journal, Reynoso-García et al. used shotgun sequencing to
analyze human coprolites (paleofeces) from two pre-Columbian contexts in Puerto Rico to …