A review on computational systems biology of pathogen–host interactions
Pathogens manipulate the cellular mechanisms of host organisms via pathogen–host
interactions (PHIs) in order to take advantage of the capabilities of host cells, leading to …
interactions (PHIs) in order to take advantage of the capabilities of host cells, leading to …
Biomedical relation extraction: from binary to complex
Biomedical relation extraction aims to uncover high‐quality relations from life science
literature with high accuracy and efficiency. Early biomedical relation extraction tasks …
literature with high accuracy and efficiency. Early biomedical relation extraction tasks …
A survey of event extraction from text
Numerous important events happen everyday and everywhere but are reported in different
media sources with different narrative styles. How to detect whether real-world events have …
media sources with different narrative styles. How to detect whether real-world events have …
Distant supervision for relation extraction beyond the sentence boundary
The growing demand for structured knowledge has led to great interest in relation extraction,
especially in cases with limited supervision. However, existing distance supervision …
especially in cases with limited supervision. However, existing distance supervision …
Joint extraction of events and entities within a document context
B Yang, T Mitchell - arxiv preprint arxiv:1609.03632, 2016 - arxiv.org
Events and entities are closely related; entities are often actors or participants in events and
events without entities are uncommon. The interpretation of events and entities is highly …
events without entities are uncommon. The interpretation of events and entities is highly …
[PDF][PDF] Stanford's multi-pass sieve coreference resolution system at the conll-2011 shared task
This paper details the coreference resolution system submitted by Stanford at the CoNLL-
2011 shared task. Our system is a collection of deterministic coreference resolution models …
2011 shared task. Our system is a collection of deterministic coreference resolution models …
Do syntax trees help pre-trained transformers extract information?
Much recent work suggests that incorporating syntax information from dependency trees can
improve task-specific transformer models. However, the effect of incorporating dependency …
improve task-specific transformer models. However, the effect of incorporating dependency …
[BOK][B] Domain-specific knowledge graph construction
M Kejriwal - 2019 - Springer
Domain-specific knowledge graphs have emerged as a field unto their own, steadily and
perhaps not so slowly. Graphs have been pervasive in AI for a long period of time, dating …
perhaps not so slowly. Graphs have been pervasive in AI for a long period of time, dating …
Structured sentiment analysis as dependency graph parsing
Structured sentiment analysis attempts to extract full opinion tuples from a text, but over time
this task has been subdivided into smaller and smaller sub-tasks, e, g,, target extraction or …
this task has been subdivided into smaller and smaller sub-tasks, e, g,, target extraction or …
Biomedical event extraction with hierarchical knowledge graphs
Biomedical event extraction is critical in understanding biomolecular interactions described
in scientific corpus. One of the main challenges is to identify nested structured events that …
in scientific corpus. One of the main challenges is to identify nested structured events that …