A review on computational systems biology of pathogen–host interactions

S Durmuş, T Çakır, A Özgür, R Guthke - Frontiers in microbiology, 2015 - frontiersin.org
Pathogens manipulate the cellular mechanisms of host organisms via pathogen–host
interactions (PHIs) in order to take advantage of the capabilities of host cells, leading to …

Biomedical relation extraction: from binary to complex

D Zhou, D Zhong, Y He - Computational and mathematical …, 2014 - Wiley Online Library
Biomedical relation extraction aims to uncover high‐quality relations from life science
literature with high accuracy and efficiency. Early biomedical relation extraction tasks …

A survey of event extraction from text

W **ang, B Wang - IEEE Access, 2019 - ieeexplore.ieee.org
Numerous important events happen everyday and everywhere but are reported in different
media sources with different narrative styles. How to detect whether real-world events have …

Distant supervision for relation extraction beyond the sentence boundary

C Quirk, H Poon - arxiv preprint arxiv:1609.04873, 2016 - arxiv.org
The growing demand for structured knowledge has led to great interest in relation extraction,
especially in cases with limited supervision. However, existing distance supervision …

Joint extraction of events and entities within a document context

B Yang, T Mitchell - arxiv preprint arxiv:1609.03632, 2016 - arxiv.org
Events and entities are closely related; entities are often actors or participants in events and
events without entities are uncommon. The interpretation of events and entities is highly …

[PDF][PDF] Stanford's multi-pass sieve coreference resolution system at the conll-2011 shared task

H Lee, Y Peirsman, A Chang, N Chambers… - Proceedings of the …, 2011 - aclanthology.org
This paper details the coreference resolution system submitted by Stanford at the CoNLL-
2011 shared task. Our system is a collection of deterministic coreference resolution models …

Do syntax trees help pre-trained transformers extract information?

DS Sachan, Y Zhang, P Qi, W Hamilton - arxiv preprint arxiv:2008.09084, 2020 - arxiv.org
Much recent work suggests that incorporating syntax information from dependency trees can
improve task-specific transformer models. However, the effect of incorporating dependency …

[BOK][B] Domain-specific knowledge graph construction

M Kejriwal - 2019 - Springer
Domain-specific knowledge graphs have emerged as a field unto their own, steadily and
perhaps not so slowly. Graphs have been pervasive in AI for a long period of time, dating …

Structured sentiment analysis as dependency graph parsing

J Barnes, R Kurtz, S Oepen, L Øvrelid… - arxiv preprint arxiv …, 2021 - arxiv.org
Structured sentiment analysis attempts to extract full opinion tuples from a text, but over time
this task has been subdivided into smaller and smaller sub-tasks, e, g,, target extraction or …

Biomedical event extraction with hierarchical knowledge graphs

KH Huang, M Yang, N Peng - arxiv preprint arxiv:2009.09335, 2020 - arxiv.org
Biomedical event extraction is critical in understanding biomolecular interactions described
in scientific corpus. One of the main challenges is to identify nested structured events that …