Recent advances and applications of machine learning in experimental solid mechanics: A review

H **, E Zhang, HD Espinosa - Applied …, 2023 - asmedigitalcollection.asme.org
For many decades, experimental solid mechanics has played a crucial role in characterizing
and understanding the mechanical properties of natural and novel artificial materials …

Establishing a conceptual framework for holistic cell states and state transitions

SM Rafelski, JA Theriot - Cell, 2024 - cell.com
Cell states were traditionally defined by how they looked, where they were located, and what
functions they performed. In this post-genomic era, the field is largely focused on a …

[HTML][HTML] Integrated intracellular organization and its variations in human iPS cells

MP Viana, J Chen, TA Knijnenburg, R Vasan, C Yan… - Nature, 2023 - nature.com
Understanding how a subset of expressed genes dictates cellular phenotype is a
considerable challenge owing to the large numbers of molecules involved, their …

Advances in spatial transcriptomic data analysis

R Dries, J Chen, N Del Rossi, MM Khan… - Genome …, 2021 - genome.cshlp.org
Spatial transcriptomics is a rapidly growing field that promises to comprehensively
characterize tissue organization and architecture at the single-cell or subcellular resolution …

Spatial Transcriptomics-correlated Electron Microscopy maps transcriptional and ultrastructural responses to brain injury

P Androvic, M Schifferer, K Perez Anderson… - Nature …, 2023 - nature.com
Understanding the complexity of cellular function within a tissue necessitates the
combination of multiple phenotypic readouts. Here, we developed a method that links …

Self-supervised deep learning encodes high-resolution features of protein subcellular localization

H Kobayashi, KC Cheveralls, MD Leonetti, LA Royer - Nature methods, 2022 - nature.com
Explaining the diversity and complexity of protein localization is essential to fully understand
cellular architecture. Here we present cytoself, a deep-learning approach for fully self …

Multimodal charting of molecular and functional cell states via in situ electro-sequencing

Q Li, Z Lin, R Liu, X Tang, J Huang, Y He, X Sui, W Tian… - Cell, 2023 - cell.com
Paired map** of single-cell gene expression and electrophysiology is essential to
understand gene-to-function relationships in electrogenic tissues. Here, we developed in …

A comprehensive analysis of gene expression changes in a high replicate and open-source dataset of differentiating hiPSC-derived cardiomyocytes

T Grancharova, KA Gerbin, AB Rosenberg, CM Roco… - Scientific Reports, 2021 - nature.com
We performed a comprehensive analysis of the transcriptional changes occurring during
human induced pluripotent stem cell (hiPSC) differentiation to cardiomyocytes. Using single …

Optofluidic imaging meets deep learning: from merging to emerging

DMD Siu, KCM Lee, BMF Chung, JSJ Wong, G Zheng… - Lab on a Chip, 2023 - pubs.rsc.org
Propelled by the striking advances in optical microscopy and deep learning (DL), the role of
imaging in lab-on-a-chip has dramatically been transformed from a silo inspection tool to a …

Transcriptomic entropy benchmarks stem cell-derived cardiomyocyte maturation against endogenous tissue at single cell level

S Kannan, M Farid, BL Lin, M Miyamoto… - PLoS computational …, 2021 - journals.plos.org
The immaturity of pluripotent stem cell (PSC)-derived tissues has emerged as a universal
problem for their biomedical applications. While efforts have been made to generate adult …