A higher-level phylogenetic classification of the Fungi

DS Hibbett, M Binder, JF Bischoff, M Blackwell… - Mycological …, 2007 - Elsevier
A comprehensive phylogenetic classification of the kingdom Fungi is proposed, with
reference to recent molecular phylogenetic analyses, and with input from diverse members …

The 2016 classification of lichenized fungi in the Ascomycota and Basidiomycota–Approaching one thousand genera

R Lücking, BP Hodkinson, SD Leavitt - The Bryologist, 2017 - BioOne
Ninety years after Zahlbruckner, we present the most recent update to the classification of
lichen fungi in the Ascomycota and Basidiomycota to genus level, with species numbers and …

Bayes or bootstrap? A simulation study comparing the performance of Bayesian Markov chain Monte Carlo sampling and bootstrap** in assessing phylogenetic …

ME Alfaro, S Zoller, F Lutzoni - Molecular biology and evolution, 2003 - academic.oup.com
Abstract Bayesian Markov chain Monte Carlo sampling has become increasingly popular in
phylogenetics as a method for both estimating the maximum likelihood topology and for …

Assembling the fungal tree of life: progress, classification, and evolution of subcellular traits

F Lutzoni, F Kauff, CJ Cox, D McLaughlin… - American journal of …, 2004 - Wiley Online Library
Based on an overview of progress in molecular systematics of the true fungi
(Fungi/Eumycota) since 1990, little overlap was found among single‐locus data matrices …

The Ascomycota tree of life: a phylum-wide phylogeny clarifies the origin and evolution of fundamental reproductive and ecological traits

CL Schoch, GH Sung, F López-Giráldez… - Systematic …, 2009 - academic.oup.com
Abstract We present a 6-gene, 420-species maximum-likelihood phylogeny of Ascomycota,
the largest phylum of Fungi. This analysis is the most taxonomically complete to date with …

A class-wide phylogenetic assessment of Dothideomycetes

CL Schoch, PW Crous, JZ Groenewald… - Studies in …, 2009 - ingentaconnect.com
We present a comprehensive phylogeny derived from 5 genes, nucSSU, nucLSU rDNA,
TEF1, RPB1 and RPB2, for 356 isolates and 41 families (six newly described in this volume) …

A multi-gene phylogeny of Clavicipitaceae (Ascomycota, Fungi): Identification of localized incongruence using a combinational bootstrap approach

GH Sung, JM Sung, NL Hywel-Jones… - Molecular phylogenetics …, 2007 - Elsevier
Multi-gene phylogenetic analyses were conducted to address the evolution of
Clavicipitaceae (Ascomycota). Data are presented here for approximately 5900 base pairs …

Phylogeny of Penicillium and the segregation of Trichocomaceae into three families

J Houbraken, RA Samson - Studies in mycology, 2011 - ingentaconnect.com
Species of Trichocomaceae occur commonly and are important to both industry and
medicine. They are associated with food spoilage and mycotoxin production and can occur …

A multigene phylogenetic synthesis for the class Lecanoromycetes (Ascomycota): 1307 fungi representing 1139 infrageneric taxa, 317 genera and 66 families

J Miadlikowska, F Kauff, F Högnabba, JC Oliver… - Molecular Phylogenetics …, 2014 - Elsevier
The Lecanoromycetes is the largest class of lichenized Fungi, and one of the most species-
rich classes in the kingdom. Here we provide a multigene phylogenetic synthesis (using …

Contribution of RPB2 to multilocus phylogenetic studies of the euascomycetes (Pezizomycotina, Fungi) with special emphasis on the lichen-forming Acarosporaceae …

V Reeb, F Lutzoni, C Roux - Molecular phylogenetics and evolution, 2004 - Elsevier
Despite the recent progress in molecular phylogenetics, many of the deepest relationships
among the main lineages of the largest fungal phylum, Ascomycota, remain unresolved. To …