[HTML][HTML] Clinical information extraction applications: a literature review

Y Wang, L Wang, M Rastegar-Mojarad, S Moon… - Journal of biomedical …, 2018 - Elsevier
Background With the rapid adoption of electronic health records (EHRs), it is desirable to
harvest information and knowledge from EHRs to support automated systems at the point of …

[HTML][HTML] Using clinical natural language processing for health outcomes research: overview and actionable suggestions for future advances

S Velupillai, H Suominen, M Liakata, A Roberts… - Journal of biomedical …, 2018 - Elsevier
The importance of incorporating Natural Language Processing (NLP) methods in clinical
informatics research has been increasingly recognized over the past years, and has led to …

2018 n2c2 shared task on adverse drug events and medication extraction in electronic health records

S Henry, K Buchan, M Filannino… - Journal of the …, 2020 - academic.oup.com
Objective This article summarizes the preparation, organization, evaluation, and results of
Track 2 of the 2018 National NLP Clinical Challenges shared task. Track 2 focused on …

[PDF][PDF] Quickumls: a fast, unsupervised approach for medical concept extraction

L Soldaini, N Goharian - MedIR workshop, sigir, 2016 - ir.cs.georgetown.edu
Entity extraction is a fundamental step in many health informatics systems. In recent years,
tools such as MetaMap and cTAKES have been widely used for medical concept extraction …

[HTML][HTML] Natural language processing for clinical notes in dentistry: a systematic review

F Pethani, AG Dunn - Journal of Biomedical Informatics, 2023 - Elsevier
Objective To identify and synthesise research on applications of natural language
processing (NLP) for information extraction and retrieval from clinical notes in dentistry …

Overview of the CLEF eHealth evaluation lab 2019

L Kelly, H Suominen, L Goeuriot, M Neves… - Experimental IR Meets …, 2019 - Springer
In this paper, we provide an overview of the seventh annual edition of the CLEF eHealth
evaluation lab. CLEF eHealth 2019 continues our evaluation resource building efforts …

Semantic annotation in biomedicine: the current landscape

J Jovanović, E Bagheri - Journal of biomedical semantics, 2017 - Springer
The abundance and unstructured nature of biomedical texts, be it clinical or research
content, impose significant challenges for the effective and efficient use of information and …

CLEF 2017 eHealth evaluation lab overview

L Goeuriot, L Kelly, H Suominen, A Névéol… - Experimental IR Meets …, 2017 - Springer
In this paper we provide an overview of the fifth edition of the CLEF eHealth evaluation lab.
CLEF eHealth 2017 continues our evaluation resource building efforts around the easing …

A sco** review of publicly available language tasks in clinical natural language processing

Y Gao, D Dligach, L Christensen… - Journal of the …, 2022 - academic.oup.com
Objective To provide a sco** review of papers on clinical natural language processing
(NLP) shared tasks that use publicly available electronic health record data from a cohort of …

[PDF][PDF] CLEF eHealth 2018 Multilingual Information Extraction Task Overview: ICD10 Coding of Death Certificates in French, Hungarian and Italian.

A Névéol, A Robert, F Grippo… - CLEF (Working …, 2018 - star.informatik.rwth-aachen.de
This paper reports on Task 1 of the 2018 CLEF eHealth evaluation lab which extended the
previous information extraction tasks of ShARe/CLEF eHealth evaluation labs. The task …