Fragmentation methods: A route to accurate calculations on large systems
MS Gordon, DG Fedorov, SR Pruitt… - Chemical …, 2012 - ACS Publications
Theoretical chemists have always strived to perform quantum mechanics (QM) calculations
on larger and larger molecules and molecular systems, as well as condensed phase …
on larger and larger molecules and molecular systems, as well as condensed phase …
Large-scale computations in chemistry: a bird's eye view of a vibrant field
1.1. The Meaning of “Large Scale” In general, the term “large scale” can have one of the
following five meanings in computational chemistry:(1) large size: power-law and …
following five meanings in computational chemistry:(1) large size: power-law and …
Exploring chemistry with the fragment molecular orbital method
DG Fedorov, T Nagata, K Kitaura - Physical Chemistry Chemical …, 2012 - pubs.rsc.org
The fragment molecular orbital (FMO) method makes possible nearly linear scaling
calculations of large molecular systems, such as water clusters, proteins and DNA. In …
calculations of large molecular systems, such as water clusters, proteins and DNA. In …
DeepQMC: An open-source software suite for variational optimization of deep-learning molecular wave functions
Computing accurate yet efficient approximations to the solutions of the electronic
Schrödinger equation has been a paramount challenge of computational chemistry for …
Schrödinger equation has been a paramount challenge of computational chemistry for …
The fragment molecular orbital method: theoretical development, implementation in GAMESS, and applications
DG Fedorov - Wiley Interdisciplinary Reviews: Computational …, 2017 - Wiley Online Library
The physical picture of the fragment molecular orbital (FMO) method is described on the
basis of a many‐body expansion with terms describing the polarization of isolated …
basis of a many‐body expansion with terms describing the polarization of isolated …
Recent advances in quantum fragmentation approaches to complex molecular and condensed‐phase systems
J Liu, X He - Wiley Interdisciplinary Reviews: Computational …, 2023 - Wiley Online Library
Quantum mechanical (QM) calculations are critical in quantitatively understanding the
relationship between the structure and physicochemical properties of various chemical …
relationship between the structure and physicochemical properties of various chemical …
Fragment quantum mechanical calculation of proteins and its applications
Conspectus The desire to study molecular systems that are much larger than what the
current state-of-the-art ab initio or density functional theory methods could handle has …
current state-of-the-art ab initio or density functional theory methods could handle has …
Molecules-in-molecules: An extrapolated fragment-based approach for accurate calculations on large molecules and materials
NJ Mayhall, K Raghavachari - Journal of chemical theory and …, 2011 - ACS Publications
We present a new extrapolated fragment-based approach, termed molecules-in-molecules
(MIM), for accurate energy calculations on large molecules. In this method, we use a …
(MIM), for accurate energy calculations on large molecules. In this method, we use a …
Linear scaling self-consistent field calculations with millions of atoms in the condensed phase
J VandeVondele, U Borstnik… - Journal of chemical theory …, 2012 - ACS Publications
In this work, the applicability and performance of a linear scaling algorithm is investigated for
three-dimensional condensed phase systems. A simple but robust approach based on the …
three-dimensional condensed phase systems. A simple but robust approach based on the …
[HTML][HTML] The BioFragment Database (BFDb): An open-data platform for computational chemistry analysis of noncovalent interactions
Accurate potential energy models are necessary for reliable atomistic simulations of
chemical phenomena. In the realm of biomolecular modeling, large systems like proteins …
chemical phenomena. In the realm of biomolecular modeling, large systems like proteins …