Graph neural networks for graphs with heterophily: A survey

X Zheng, Y Wang, Y Liu, M Li, M Zhang, D **… - arxiv preprint arxiv …, 2022 - arxiv.org
Recent years have witnessed fast developments of graph neural networks (GNNs) that have
benefited myriads of graph analytic tasks and applications. In general, most GNNs depend …

[HTML][HTML] Graph artificial intelligence in medicine

R Johnson, MM Li, A Noori, O Queen… - Annual review of …, 2024 - annualreviews.org
In clinical artificial intelligence (AI), graph representation learning, mainly through graph
neural networks and graph transformer architectures, stands out for its capability to capture …

A foundation model for clinician-centered drug repurposing

K Huang, P Chandak, Q Wang, S Havaldar, A Vaid… - Nature Medicine, 2024 - nature.com
Drug repurposing—identifying new therapeutic uses for approved drugs—is often a
serendipitous and opportunistic endeavour to expand the use of drugs for new diseases …

Evaluating post-hoc explanations for graph neural networks via robustness analysis

J Fang, W Liu, Y Gao, Z Liu, A Zhang… - Advances in neural …, 2023 - proceedings.neurips.cc
This work studies the evaluation of explaining graph neural networks (GNNs), which is
crucial to the credibility of post-hoc explainability in practical usage. Conventional evaluation …

Similarity of neural network models: A survey of functional and representational measures

M Klabunde, T Schumacher, M Strohmaier… - arxiv preprint arxiv …, 2023 - arxiv.org
Measuring similarity of neural networks to understand and improve their behavior has
become an issue of great importance and research interest. In this survey, we provide a …

Global explainability of gnns via logic combination of learned concepts

S Azzolin, A Longa, P Barbiero, P Liò… - arxiv preprint arxiv …, 2022 - arxiv.org
While instance-level explanation of GNN is a well-studied problem with plenty of
approaches being developed, providing a global explanation for the behaviour of a GNN is …

Explainable spatially explicit geospatial artificial intelligence in urban analytics

P Liu, Y Zhang, F Biljecki - Environment and Planning B …, 2024 - journals.sagepub.com
Geospatial artificial intelligence (GeoAI) is proliferating in urban analytics, where graph
neural networks (GNNs) have become one of the most popular methods in recent years …

Explaining the explainers in graph neural networks: a comparative study

A Longa, S Azzolin, G Santin, G Cencetti, P Liò… - ACM Computing …, 2025 - dl.acm.org
Following a fast initial breakthrough in graph-based learning, Graph Neural Networks
(GNNs) have reached a widespread application in many science and engineering fields …

[PDF][PDF] Current and future directions in network biology

M Zitnik, MM Li, A Wells, K Glass… - Bioinformatics …, 2024 - academic.oup.com
Network biology is an interdisciplinary field bridging computational and biological sciences
that has proved pivotal in advancing the understanding of cellular functions and diseases …

Integrating explainability into graph neural network models for the prediction of X-ray absorption spectra

A Kotobi, K Singh, D Höche, S Bari… - Journal of the …, 2023 - ACS Publications
The use of sophisticated machine learning (ML) models, such as graph neural networks
(GNNs), to predict complex molecular properties or all kinds of spectra has grown rapidly …