A comprehensive survey of prospective structure-based virtual screening for early drug discovery in the past fifteen years

H Zhu, Y Zhang, W Li, N Huang - International Journal of Molecular …, 2022 - mdpi.com
Structure-based virtual screening (SBVS), also known as molecular docking, has been
increasingly applied to discover small-molecule ligands based on the protein structures in …

[HTML][HTML] Phytochemicals in drug discovery—A confluence of tradition and innovation

P Chihomvu, A Ganesan, S Gibbons… - International journal of …, 2024 - mdpi.com
Phytochemicals have a long and successful history in drug discovery. With recent
advancements in analytical techniques and methodologies, discovering bioactive leads from …

On the origins of SARS-CoV-2 main protease inhibitors

YL Janin - RSC Medicinal Chemistry, 2024 - pubs.rsc.org
In order to address the world-wide health challenge caused by the COVID-19 pandemic, the
3CL protease/SARS-CoV-2 main protease (SARS-CoV-2-Mpro) coded by its nsp5 gene …

Structure-based discovery of inhibitors of the SARS-CoV-2 Nsp14 N7-methyltransferase

I Singh, F Li, EA Fink, I Chau, A Li… - Journal of medicinal …, 2023 - ACS Publications
An under-explored target for SARS-CoV-2 is the S-adenosyl methionine (SAM)-dependent
methyltransferase Nsp14, which methylates the N7-guanosine of viral RNA at the 5′-end …

Regression-based active learning for accessible acceleration of ultra-large library docking

E Marin, M Kovaleva, M Kadukova… - Journal of chemical …, 2023 - ACS Publications
Structure-based drug discovery is a process for both hit finding and optimization that relies
on a validated three-dimensional model of a target biomolecule, used to rationalize the …

Identifying artifacts from large library docking

Y Wu, F Liu, I Glenn, K Fonseca-Valencia… - Journal of Medicinal …, 2024 - ACS Publications
While large library docking has discovered potent ligands for multiple targets, as the libraries
have grown the hit lists can become dominated by rare artifacts that cheat our scoring …

Covalent small-molecule inhibitors of SARS-CoV-2 Mpro: insights into their design, classification, Biological Activity, and binding interactions

AM Shawky, FA Almalki, HA Alzahrani… - European Journal of …, 2024 - Elsevier
Since 2020, many compounds have been investigated for their potential use in the treatment
of SARS-CoV-2 infection. Among these agents, a huge number of natural products and FDA …

Plant flavonoid inhibition of SARS-CoV-2 main protease and viral replication

L Lin, DY Chen, C Scartelli, H **e, G Merrill-Skoloff… - Iscience, 2023 - cell.com
Plant-based flavonoids have been evaluated as inhibitors of β-coronavirus replication and
as therapies for COVID-19 on the basis of their safety profile and widespread availability …

Structure-Based Identification of Organoruthenium Compounds as Nanomolar Antagonists of Cannabinoid Receptors

Q Wang, X Fu, Y Yan, T Liu, Y **e, X Song… - Journal of Chemical …, 2024 - ACS Publications
Metal complexes exhibit a diverse range of coordination geometries, representing novel
privileged scaffolds with convenient click types of preparation inaccessible for typical carbon …

Are protein–ligand docking programs good enough to predict experimental poses of noncovalent ligands bound to the SARS-CoV-2 main protease?

A Llop-Peiró, G Macip, S Garcia-Vallvé, G Pujadas - Drug Discovery Today, 2024 - Elsevier
Hundreds of virtual screening (VS) studies have targeted the severe acute respiratory
syndrome-coronavirus 2 (SARS-CoV-2) main protease (M-pro) to identify small molecules …