Recent developments and applications of the MMPBSA method

C Wang, DA Greene, L **ao, R Qi… - Frontiers in molecular …, 2018 - frontiersin.org
The Molecular Mechanics Poisson-Boltzmann Surface Area (MMPBSA) approach has been
widely applied as an efficient and reliable free energy simulation method to model molecular …

New insights into protein–protein interaction modulators in drug discovery and therapeutic advance

H Nada, Y Choi, S Kim, KS Jeong… - … and Targeted Therapy, 2024 - nature.com
Protein-protein interactions (PPIs) are fundamental to cellular signaling and transduction
which marks them as attractive therapeutic drug development targets. What were once …

Exploring the binding mechanism of pumpkin seed protein and apigenin: Spectroscopic analysis, molecular docking and molecular dynamics simulation

F Liang, Y Shi, J Shi, WW Cao - Food Hydrocolloids, 2023 - Elsevier
Apigenin is a vital flavonoid that has attracted considerable attention in recent years due to
its potent health benefits. Pumpkin seed protein (PSP) is a valuable by-product after …

Postharvest ripening of newly harvested corn: Weakened interactions between starch and protein

N Hu, W Qi, J Zhu, S Li, M Zheng, C Zhao, J Liu - Food Chemistry, 2024 - Elsevier
The effects of postharvest ripening of corn on the mechanisms of starch and protein
interactions were investigated using molecular dynamics and several chemical substances …

[HTML][HTML] Molecular structure-based screening of the constituents of Calotropis procera identifies potential inhibitors of diabetes mellitus target alpha glucosidase

CA Adinortey, GB Kwarko, R Koranteng… - Current Issues in …, 2022 - mdpi.com
Diabetes mellitus is a disorder characterized by higher levels of blood glucose due to
impaired insulin mechanisms. Alpha glucosidase is a critical drug target implicated in the …

Plas-5k: Dataset of protein-ligand affinities from molecular dynamics for machine learning applications

DB Korlepara, CS Vasavi, S Jeurkar, PK Pal, S Roy… - Scientific data, 2022 - nature.com
Computational methods and recently modern machine learning methods have played a key
role in structure-based drug design. Though several benchmarking datasets are available …

Innovative screening for functional improved aromatic amine derivatives: Toxicokinetics, free radical oxidation pathway and carcinogenic adverse outcome pathway

Y Liu, X Li, Q Pu, R Fu, Z Wang, Y Li, X Li - Journal of Hazardous Materials, 2023 - Elsevier
Aromatic amines, one of the most widely used low-cost antioxidants in rubbers, have been
regarded as pollutants with human health concerns. To overcome this problem, this study …

Across the blood-brain barrier: Neurotherapeutic screening and characterization of naringenin as a novel CRMP-2 inhibitor in the treatment of Alzheimer's disease …

M Lawal, FA Olotu, MES Soliman - Computers in Biology and Medicine, 2018 - Elsevier
The discovery and developmental processes of CNS drugs have been limited by the inability
of potential drug molecules to pass through the blood-brain barrier (BBB). This presents a …

[HTML][HTML] Computational Screening of T-Muurolol for an Alternative Antibacterial Solution against Staphylococcus aureus Infections: An In Silico Approach for …

S Bhattacharya, PK Khanra, A Dutta, N Gupta… - International Journal of …, 2024 - mdpi.com
Staphylococcus aureus infections present a significant threat to the global healthcare
system. The increasing resistance to existing antibiotics and their limited efficacy …

Exploration of binding mechanism of whey protein isolate and proanthocyanidin: Spectroscopic analysis and molecular dynamics simulation

D Guo, C Chen, Q Pan, M Sun, H Wang, Y Yi… - Food Research …, 2024 - Elsevier
The non-covalent whey protein isolate-proanthocyanidin (WPI-PC) complex was constructed
and possessed superior anti-muscle attenuation activity in our previous study. While the non …