Evaluation of cell-cell interaction methods by integrating single-cell RNA sequencing data with spatial information

Z Liu, D Sun, C Wang - Genome Biology, 2022 - Springer
Background Cell-cell interactions are important for information exchange between different
cells, which are the fundamental basis of many biological processes. Recent advances in …

Heat stress destabilizes symbiotic nutrient cycling in corals

N Rädecker, C Pogoreutz, HM Gegner… - Proceedings of the …, 2021 - pnas.org
Recurrent mass bleaching events are pushing coral reefs worldwide to the brink of
ecological collapse. While the symptoms and consequences of this breakdown of the coral …

[HTML][HTML] Transcriptional reprogramming of distinct peripheral sensory neuron subtypes after axonal injury

W Renthal, I Tochitsky, L Yang, YC Cheng, E Li… - Neuron, 2020 - cell.com
Primary somatosensory neurons are specialized to transmit specific types of sensory
information through differences in cell size, myelination, and the expression of distinct …

[HTML][HTML] Single-cell profiling of Arabidopsis leaves to Pseudomonas syringae infection

J Zhu, S Lolle, A Tang, B Guel, B Kvitko, B Cole… - Cell reports, 2023 - cell.com
Plant response to pathogen infection varies within a leaf, yet this heterogeneity is not well
resolved. We expose Arabidopsis to Pseudomonas syringae or mock treatment and profile> …

PlantTFDB 4.0: toward a central hub for transcription factors and regulatory interactions in plants

J **, F Tian, DC Yang, YQ Meng, L Kong… - Nucleic acids …, 2016 - academic.oup.com
With the goal of providing a comprehensive, high-quality resource for both plant transcription
factors (TFs) and their regulatory interactions with target genes, we upgraded plant TF …

[HTML][HTML] Phylogenomic discovery of deleterious mutations facilitates hybrid potato breeding

Y Wu, D Li, Y Hu, H Li, GP Ramstein, S Zhou, X Zhang… - Cell, 2023 - cell.com
Hybrid potato breeding will transform the crop from a clonally propagated tetraploid to a
seed-reproducing diploid. Historical accumulation of deleterious mutations in potato …

Phased, chromosome-scale genome assemblies of tetraploid potato reveal a complex genome, transcriptome, and predicted proteome landscape underpinning …

G Hoopes, X Meng, JP Hamilton, SR Achakkagari… - Molecular plant, 2022 - cell.com
Cultivated potato is a clonally propagated autotetraploid species with a highly
heterogeneous genome. Phased assemblies of six cultivars including two chromosome …

DNA methylation in newborns and maternal smoking in pregnancy: genome-wide consortium meta-analysis

BR Joubert, JF Felix, P Yousefi, KM Bakulski… - The American Journal of …, 2016 - cell.com
Epigenetic modifications, including DNA methylation, represent a potential mechanism for
environmental impacts on human disease. Maternal smoking in pregnancy remains an …

Behavioral and genetic mechanisms of social evolution: insights from incipiently and facultatively social bees

WA Shell, SM Rehan - Apidologie, 2018 - Springer
Facultatively social species exhibit behavioral plasticity in response to changes in ecological
conditions and social environment, and thus provide a natural experiment to compare …

Temperature optima of a natural diatom population increases as global warming proceeds

GSI Hattich, S Jokinen, S Sildever, M Gareis… - Nature Climate …, 2024 - nature.com
Studies in laboratory-based experimental evolution have demonstrated that phytoplankton
species can rapidly adapt to higher temperatures. However, adaptation processes and their …