[HTML][HTML] Biobased short chain fatty acid production-Exploring microbial community dynamics and metabolic networks through kinetic and microbial modeling …
In recent years, there has been growing interest in harnessing anaerobic digestion
technology for resource recovery from waste streams. This approach has evolved beyond its …
technology for resource recovery from waste streams. This approach has evolved beyond its …
Agricultural practices influence soil microbiome assembly and interactions at different depths identified by machine learning
Agricultural practices affect soil microbes which are critical to soil health and sustainable
agriculture. To understand prokaryotic and fungal assembly under agricultural practices, we …
agriculture. To understand prokaryotic and fungal assembly under agricultural practices, we …
Identifying keystone species in microbial communities using deep learning
Previous studies suggested that microbial communities can harbour keystone species
whose removal can cause a dramatic shift in microbiome structure and functioning. Yet, an …
whose removal can cause a dramatic shift in microbiome structure and functioning. Yet, an …
Metagenomic and machine learning-aided identification of biomarkers driving distinctive Cd accumulation features in the root-associated microbiome of two rice …
Z Cheng, Q Zheng, J Shi, Y He, X Yang… - Isme …, 2023 - academic.oup.com
Develo** low-cadmium (Cd) rice cultivars has emerged as a promising avenue for food
safety in Cd-contaminated farmlands. The root-associated microbiomes of rice have been …
safety in Cd-contaminated farmlands. The root-associated microbiomes of rice have been …
Recurrent neural networks enable design of multifunctional synthetic human gut microbiome dynamics
Predicting the dynamics and functions of microbiomes constructed from the bottom-up is a
key challenge in exploiting them to our benefit. Current models based on ecological theory …
key challenge in exploiting them to our benefit. Current models based on ecological theory …
[HTML][HTML] Algal community structure prediction by machine learning
The algal community structure is vital for aquatic management. However, the complicated
environmental and biological processes make modeling challenging. To cope with this …
environmental and biological processes make modeling challenging. To cope with this …
Deep learning in microbiome analysis: a comprehensive review of neural network models
P Przymus, K Rykaczewski, A Martín-Segura… - Frontiers in …, 2025 - frontiersin.org
Microbiome research, the study of microbial communities in diverse environments, has seen
significant advances due to the integration of deep learning (DL) methods. These …
significant advances due to the integration of deep learning (DL) methods. These …
Sparsity of higher-order landscape interactions enables learning and prediction for microbiomes
Microbiome engineering offers the potential to leverage microbial communities to improve
outcomes in human health, agriculture, and climate. To translate this potential into reality, it …
outcomes in human health, agriculture, and climate. To translate this potential into reality, it …
Learning beyond-pairwise interactions enables the bottom–up prediction of microbial community structure
H Ishizawa, Y Tashiro, D Inoue… - Proceedings of the …, 2024 - National Acad Sciences
Understanding the assembly of multispecies microbial communities represents a significant
challenge in ecology and has wide applications in agriculture, wastewater treatment, and …
challenge in ecology and has wide applications in agriculture, wastewater treatment, and …
Evaluation of microbial and organic metabolite characteristics in fermented tobacco from different grades by comprehensive microbiomes and chemometrics analysis
M Zhang, D Guo, H Wang, G Wu, Y Shi, T Zheng… - Industrial Crops and …, 2024 - Elsevier
The microbial and organic metabolite characteristics of different grades of fermented filler
tobacco leaves (FTLs) have a direct impact on the quality of the finished cigars. This study …
tobacco leaves (FTLs) have a direct impact on the quality of the finished cigars. This study …