Mass spectrometry-based protein footprinting for higher-order structure analysis: fundamentals and applications

XR Liu, MM Zhang, ML Gross - Chemical reviews, 2020 - ACS Publications
Proteins adopt different higher-order structures (HOS) to enable their unique biological
functions. Understanding the complexities of protein higher-order structures and dynamics …

Theory of protein folding: the energy landscape perspective

JN Onuchic, Z Luthey-Schulten… - Annual review of …, 1997 - annualreviews.org
▪ Abstract The energy landscape theory of protein folding is a statistical description of a
protein's potential surface. It assumes that folding occurs through organizing an ensemble of …

Insights from molecular dynamics simulations for computational protein design

MC Childers, V Daggett - Molecular systems design & engineering, 2017 - pubs.rsc.org
A grand challenge in the field of structural biology is to design and engineer proteins that
exhibit targeted functions. Although much success on this front has been achieved, design …

Principles of protein folding—a perspective from simple exact models

KA Dill, S Bromberg, K Yue, HS Chan… - Protein …, 1995 - Wiley Online Library
General principles of protein structure, stability, and folding kinetics have recently been
explored in computer simulations of simple exact lattice models. These models represent …

Molten globule and protein folding

OB Ptitsyn - Advances in protein chemistry, 1995 - Elsevier
Publisher Summary This chapter describes the present state of the studies of the molten
globule state and its role in protein folding and physiological processes. Recent data on the …

Gaussian dynamics of folded proteins

T Haliloglu, I Bahar, B Erman - Physical review letters, 1997 - APS
Vibrational dynamics of folded proteins is studied using a Gaussian model in which the
protein is viewed as a network, residues representing the junctions, and the connectivity …

Energetics of protein structure

GI Makhatadze, PL Privalov - Advances in protein chemistry, 1995 - Elsevier
Publisher Summary This chapter summarizes the experimental information on protein
energetics. This field is develo** fast and the concept of the energetics of protein structure …

Helix cap**

R Aurora, GD Rosee - Protein Science, 1998 - Wiley Online Library
Helix‐cap** motifs are specific patterns of hydrogen bonding and hydrophobic
interactions found at or near the ends of helices in both proteins and peptides. In an α‐helix …

Unfolded proteins and protein folding studied by NMR

HJ Dyson, PE Wright - Chemical reviews, 2004 - ACS Publications
Preparation of biological macromolecules in the pure state requires that cells be disrupted,
releasing and mixing the contents. Only the most stable and highly structured molecules can …

The application of circular dichroism to studies of protein folding and unfolding

SM Kelly, NC Price - Biochimica et Biophysica Acta (BBA)-Protein Structure …, 1997 - Elsevier
In this review, we shall outline the basic principles Ž. of circular dichroism CD and indicate
the types of structural information relevant to the study of the Ž. folding and unfolding or …