Epigenetic gene regulation in plants and its potential applications in crop improvement

H Zhang, JK Zhu - Nature Reviews Molecular Cell Biology, 2024 - nature.com
DNA methylation, also known as 5-methylcytosine, is an epigenetic modification that has
crucial functions in plant growth, development and adaptation. The cellular DNA methylation …

Plant pan-genomics and its applications

J Shi, Z Tian, J Lai, X Huang - Molecular Plant, 2023 - cell.com
Plant genomes are so highly diverse that a substantial proportion of genomic sequences are
not shared among individuals. The variable DNA sequences, along with the conserved core …

De novo assembly, annotation, and comparative analysis of 26 diverse maize genomes

MB Hufford, AS Seetharam, MR Woodhouse… - Science, 2021 - science.org
We report de novo genome assemblies, transcriptomes, annotations, and methylomes for
the 26 inbreds that serve as the founders for the maize nested association map** …

Molecular genetic variation of animals and plants under domestication

L Andersson, M Purugganan - Proceedings of the National …, 2022 - National Acad Sciences
Domesticated plants and animals played crucial roles as models for evolutionary change by
means of natural selection and for establishing the rules of inheritance, originally proposed …

Multi-omics revolution to promote plant breeding efficiency

U Mahmood, X Li, Y Fan, W Chang, Y Niu, J Li… - Frontiers in Plant …, 2022 - frontiersin.org
Crop production is the primary goal of agricultural activities, which is always taken into
consideration. However, global agricultural systems are coming under increasing pressure …

Population-wide DNA methylation polymorphisms at single-nucleotide resolution in 207 cotton accessions reveal epigenomic contributions to complex traits

T Zhao, X Guan, Y Hu, Z Zhang, H Yang, X Shi, J Han… - Cell Research, 2024 - nature.com
DNA methylation plays multiple regulatory roles in crop development. However, the
relationships of methylation polymorphisms with genetic polymorphisms, gene expression …

Molecular properties of epimutation hotspots

RR Hazarika, M Serra, Z Zhang, Y Zhang, RJ Schmitz… - Nature plants, 2022 - nature.com
Mistakes in the maintenance of CG methylation are a source of heritable epimutations in
plants. Multigenerational surveys indicate that the rate of these stochastic events varies …

Comparative genome analyses highlight transposon-mediated genome expansion and the evolutionary architecture of 3D genomic folding in cotton

M Wang, J Li, P Wang, F Liu, Z Liu… - Molecular Biology …, 2021 - academic.oup.com
Transposable element (TE) amplification has been recognized as a driving force mediating
genome size expansion and evolution, but the consequences for sha** 3D genomic …

The epiallelic potential of transposable elements and its evolutionary significance in plants

P Baduel, V Colot - … Transactions of the Royal Society B, 2021 - royalsocietypublishing.org
DNA provides the fundamental framework for heritability, yet heritable trait variation need not
be completely 'hard-wired'into the DNA sequence. In plants, the epigenetic machinery that …

[HTML][HTML] Current status and trends in forest genomics

D Borthakur, V Busov, XH Cao, Q Du, O Gailing… - Forestry …, 2022 - maxapress.com
Forests are not only the most predominant of the Earth's terrestrial ecosystems, but are also
the core supply for essential products for human use. However, global climate change and …