Research frontiers in penaeid shrimp reproduction: Future trends to improve commercial production

J Alfaro-Montoya, A Braga, R Umaña-Castro - Aquaculture, 2019 - Elsevier
Shrimp farming worldwide is based on a similar technological package, characterized by
three phases: Controlled Reproduction, Larvae Culture, and Grow-out Culture. This basic …

Molecular physiology of copepods-from biomarkers to transcriptomes and back again

AM Tarrant, B Nilsson, BW Hansen - … and Physiology Part D: Genomics and …, 2019 - Elsevier
Planktonic copepods are a diverse and abundant group of small (~ mm sized) aquatic
animals that play a critical role in linking the base of the food chain with higher trophic levels …

Twelve quick steps for genome assembly and annotation in the classroom

H Jung, T Ventura, JS Chung, WJ Kim… - PLoS computational …, 2020 - journals.plos.org
Eukaryotic genome sequencing and de novo assembly, once the exclusive domain of well-
funded international consortia, have become increasingly affordable, thus fitting the budgets …

Transcriptomic changes across vitellogenesis in the black tiger prawn (Penaeus monodon), neuropeptides and G protein-coupled receptors repertoire curation

TV Nguyen, LW Ryan, J Nocillado… - General and …, 2020 - Elsevier
The black tiger prawn (Penaeus monodon) is one of the most commercially important prawn
species world-wide, yet there are currently key issues that hinder aquaculture of this …

CrustyBase: an interactive online database for crustacean transcriptomes

CJ Hyde, QP Fitzgibbon, A Elizur, GG Smith, T Ventura - BMC genomics, 2020 - Springer
Transcriptome sequencing has opened the field of genomics to a wide variety of
researchers, owing to its efficiency, applicability across species and ability to quantify gene …

American lobster postlarvae alter gene regulation in response to ocean warming and acidification

M Niemisto, DM Fields, KF Clark, JD Waller… - Ecology and …, 2021 - Wiley Online Library
Anthropogenic carbon emissions released into the atmosphere is driving rapid, concurrent
increases in temperature and acidity across the world's oceans. Disentangling the …

Growth patterns and mortality of lobster Panulirus ornatus from the catch of bottom gill net fishers in the western waters of Tarakan Island

A Indarjo, G Salim, TI Maryanto, LA Linting… - HAYATI Journal of …, 2023 - journal.ipb.ac.id
Large-bodied Panulirus ornatus lobsters are economically important because they are an
aquatic biota. It is one of the most important commodities in the city of Tarakan. The aim is to …

bestDEG: a web-based application automatically combines various tools to precisely predict differentially expressed genes (DEGs) from RNA-Seq data

U Sangket, P Yodsawat, J Nuanpirom… - PeerJ, 2022 - peerj.com
Background Differential gene expression analysis using RNA sequencing technology (RNA-
Seq) has become the most popular technique in transcriptome research. Although many R …

Transcriptomic Analysis and Time to Hatch Visual Prediction of Embryo Development in the Ornate Spiny Lobster (Panulirus ornatus)

CL Lewis, QP Fitzgibbon, GG Smith, A Elizur… - Frontiers in Marine …, 2022 - frontiersin.org
The ability to conduct closed life-cycle culture of tropical spiny lobsters, Panulirus ornatus, at
the Institute for Marine and Antarctic Studies (IMAS) provides a unique opportunity to …

Assessing transgenerational gene editing capacity for enhancing aquaculture productivity in decapod crustaceans

N Black, TM Banks, T Ventura - Reviews in Aquaculture, 2024 - Wiley Online Library
In the wake of global population increases and stagnating capture fishery production, there
exists a requirement for novel biotechnologies to increase aquaculture productivity to offset …