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High‐throughput metagenomics for identification of pathogens in the clinical settings
N Li, Q Cai, Q Miao, Z Song, Y Fang, B Hu - Small methods, 2021 - Wiley Online Library
The application of sequencing technology is shifting from research to clinical laboratories
owing to rapid technological developments and substantially reduced costs. However …
owing to rapid technological developments and substantially reduced costs. However …
[HTML][HTML] Next-generation sequencing for HIV drug resistance testing: laboratory, clinical, and implementation considerations
Higher accessibility and decreasing costs of next generation sequencing (NGS), availability
of commercial kits, and development of dedicated analysis pipelines, have allowed an …
of commercial kits, and development of dedicated analysis pipelines, have allowed an …
A comprehensive genomics solution for HIV surveillance and clinical monitoring in low-income settings
Viral genetic sequencing can be used to monitor the spread of HIV drug resistance, identify
appropriate antiretroviral regimes, and characterize transmission dynamics. Despite …
appropriate antiretroviral regimes, and characterize transmission dynamics. Despite …
Performance comparison of next generation sequencing analysis pipelines for HIV-1 drug resistance testing
ER Lee, N Parkin, C Jennings, CJ Brumme, E Enns… - Scientific reports, 2020 - nature.com
Next generation sequencing (NGS) is a trending new standard for genotypic HIV-1 drug
resistance (HIVDR) testing. Many NGS HIVDR data analysis pipelines have been …
resistance (HIVDR) testing. Many NGS HIVDR data analysis pipelines have been …
[HTML][HTML] Technologies for HIV-1 drug resistance testing: inventory and needs
KJ Metzner - Current Opinion in HIV and AIDS, 2022 - journals.lww.com
The use of NGS technologies on HIV DR testing will allow unprecedented insights into
genomic structures of virus populations that may be of immediate relevance to both clinical …
genomic structures of virus populations that may be of immediate relevance to both clinical …
[HTML][HTML] Multi-laboratory comparison of next-generation to sanger-based sequencing for HIV-1 drug resistance genoty**
Next-generation sequencing (NGS) is increasingly used for HIV-1 drug resistance
genoty**. NGS methods have the potential for a more sensitive detection of low …
genoty**. NGS methods have the potential for a more sensitive detection of low …
Validation of an HIV whole genome sequencing method for HIV drug resistance testing in an Australian clinical microbiology laboratory
F Jenkins, T Le, R Farhat, A Pinto… - Journal of Medical …, 2023 - Wiley Online Library
Detection of HIV drug resistance (HIVDR) is vital to successful anti‐retroviral therapy (ART).
HIVDR testing to determine drug‐resistance mutations is routinely performed in Australia to …
HIVDR testing to determine drug‐resistance mutations is routinely performed in Australia to …
Low-abundance drug-resistant HIV-1 variants in antiretroviral drug-naive individuals: a systematic review of detection methods, prevalence, and clinical impact
Background The presence of high-abundance drug-resistant HIV-1 jeopardizes success of
antiretroviral therapy (ART). Despite numerous investigations, the clinical impact of low …
antiretroviral therapy (ART). Despite numerous investigations, the clinical impact of low …
A MiSeq-HyDRA platform for enhanced HIV drug resistance genoty** and surveillance
T Taylor, ER Lee, M Nykoluk, E Enns, B Liang… - Scientific reports, 2019 - nature.com
Conventional HIV drug resistance (HIVDR) genoty** utilizes Sanger sequencing (SS)
methods, which are limited by low data throughput and the inability of detecting low …
methods, which are limited by low data throughput and the inability of detecting low …
[HTML][HTML] HIV-1 drug resistance genoty** in resource limited settings: Current and future perspectives in sequencing technologies
Affordable, sensitive, and scalable technologies are needed for monitoring antiretroviral
treatment (ART) success with the goal of eradicating HIV-1 infection. This review discusses …
treatment (ART) success with the goal of eradicating HIV-1 infection. This review discusses …