High‐throughput metagenomics for identification of pathogens in the clinical settings

N Li, Q Cai, Q Miao, Z Song, Y Fang, B Hu - Small methods, 2021 - Wiley Online Library
The application of sequencing technology is shifting from research to clinical laboratories
owing to rapid technological developments and substantially reduced costs. However …

[HTML][HTML] Next-generation sequencing for HIV drug resistance testing: laboratory, clinical, and implementation considerations

S Ávila-Ríos, N Parkin, R Swanstrom, R Paredes… - Viruses, 2020 - mdpi.com
Higher accessibility and decreasing costs of next generation sequencing (NGS), availability
of commercial kits, and development of dedicated analysis pipelines, have allowed an …

A comprehensive genomics solution for HIV surveillance and clinical monitoring in low-income settings

D Bonsall, T Golubchik, M de Cesare… - Journal of clinical …, 2020 - journals.asm.org
Viral genetic sequencing can be used to monitor the spread of HIV drug resistance, identify
appropriate antiretroviral regimes, and characterize transmission dynamics. Despite …

Performance comparison of next generation sequencing analysis pipelines for HIV-1 drug resistance testing

ER Lee, N Parkin, C Jennings, CJ Brumme, E Enns… - Scientific reports, 2020 - nature.com
Next generation sequencing (NGS) is a trending new standard for genotypic HIV-1 drug
resistance (HIVDR) testing. Many NGS HIVDR data analysis pipelines have been …

[HTML][HTML] Technologies for HIV-1 drug resistance testing: inventory and needs

KJ Metzner - Current Opinion in HIV and AIDS, 2022 - journals.lww.com
The use of NGS technologies on HIV DR testing will allow unprecedented insights into
genomic structures of virus populations that may be of immediate relevance to both clinical …

[HTML][HTML] Multi-laboratory comparison of next-generation to sanger-based sequencing for HIV-1 drug resistance genoty**

NT Parkin, S Avila-Rios, DF Bibby, CJ Brumme… - Viruses, 2020 - mdpi.com
Next-generation sequencing (NGS) is increasingly used for HIV-1 drug resistance
genoty**. NGS methods have the potential for a more sensitive detection of low …

Validation of an HIV whole genome sequencing method for HIV drug resistance testing in an Australian clinical microbiology laboratory

F Jenkins, T Le, R Farhat, A Pinto… - Journal of Medical …, 2023 - Wiley Online Library
Detection of HIV drug resistance (HIVDR) is vital to successful anti‐retroviral therapy (ART).
HIVDR testing to determine drug‐resistance mutations is routinely performed in Australia to …

A MiSeq-HyDRA platform for enhanced HIV drug resistance genoty** and surveillance

T Taylor, ER Lee, M Nykoluk, E Enns, B Liang… - Scientific reports, 2019 - nature.com
Conventional HIV drug resistance (HIVDR) genoty** utilizes Sanger sequencing (SS)
methods, which are limited by low data throughput and the inability of detecting low …

[HTML][HTML] HIV-1 drug resistance genoty** in resource limited settings: Current and future perspectives in sequencing technologies

S Manyana, L Gounder, M Pillay, J Manasa, K Naidoo… - Viruses, 2021 - mdpi.com
Affordable, sensitive, and scalable technologies are needed for monitoring antiretroviral
treatment (ART) success with the goal of eradicating HIV-1 infection. This review discusses …