NMR: unique strengths that enhance modern metabolomics research
Nuclear magnetic resonance (NMR) spectroscopy is an important analytical technique in
metabolomics. Because it provides atomic-level detail of small molecules, NMR is …
metabolomics. Because it provides atomic-level detail of small molecules, NMR is …
Modulators of a robust and efficient metabolism: perspective and insights from the Rid superfamily of proteins
RL Fulton, DM Downs - Advances in microbial physiology, 2023 - Elsevier
Metabolism is an integrated network of biochemical pathways that assemble to generate the
robust, responsive physiologies of microorganisms. Despite decades of fundamental studies …
robust, responsive physiologies of microorganisms. Despite decades of fundamental studies …
A model for microbial interactions and metabolomic alterations in Candida glabrata-Staphylococcus epidermidis dual-species biofilms
The fungus Candida glabrata and the bacterium Staphylococcus epidermidis are important
biofilm-forming microorganisms responsible of nosocomial infections in patients. In addition …
biofilm-forming microorganisms responsible of nosocomial infections in patients. In addition …
Trehalose-deficient Acinetobacter baumannii exhibits reduced virulence by losing capsular polysaccharide and altering membrane integrity
CS Crippen, J Glushka, E Vinogradov… - …, 2021 - academic.oup.com
Acinetobacter baumannii has become a leading cause of bacterial nosocomial infections, in
part, due to its ability to resist desiccation, disinfection and antibiotics. Several factors …
part, due to its ability to resist desiccation, disinfection and antibiotics. Several factors …
Tetrahydrofolate levels influence 2-aminoacrylate stress in Salmonella enterica
W Shen, DM Downs - Journal of Bacteriology, 2024 - Am Soc Microbiol
In Salmonella enterica, the absence of the RidA deaminase results in the accumulation of
the reactive enamine 2-aminoacrylate (2AA). The resulting 2AA stress impacts metabolism …
the reactive enamine 2-aminoacrylate (2AA). The resulting 2AA stress impacts metabolism …
[HTML][HTML] Approaches for completing metabolic networks through metabolite damage and repair discovery
Metabolites are prone to damage, either via enzymatic side reactions, which collectively
form the underground metabolism, or via spontaneous chemical reactions. The resulting non …
form the underground metabolism, or via spontaneous chemical reactions. The resulting non …
Metabolomics Insights into Chemical Convergence in Xanthomonas perforans and Metabolic Changes Following Treatment with the Small Molecule Carvacrol
Microbes are natural chemical factories and their metabolome comprise diverse arrays of
chemicals. The genus Xanthomonas comprises some of the most important plant pathogens …
chemicals. The genus Xanthomonas comprises some of the most important plant pathogens …
Site‐directed mutagenesis reveals the interplay between stability, structure, and enzymatic activity in RidA from Capra hircus
G Rizzi, S Digiovanni, G Degani, A Barbiroli… - Protein …, 2024 - Wiley Online Library
Reactive intermediate deaminase A (RidA) is a highly conserved enzyme that catalyzes the
hydrolysis of 2‐imino acids to the corresponding 2‐keto acids and ammonia. RidA thus …
hydrolysis of 2‐imino acids to the corresponding 2‐keto acids and ammonia. RidA thus …
[HTML][HTML] RidA proteins contribute to fitness of S. enterica and E. coli by reducing 2AA stress and moderating flux to isoleucine biosynthesis
RL Fulton, BR Sawyer, DM Downs - Microbial Cell, 2024 - pmc.ncbi.nlm.nih.gov
Defining the physiological role of a gene product relies on interpreting phenotypes caused
by the lack, or alteration, of the respective gene product. Mutations in critical genes often …
by the lack, or alteration, of the respective gene product. Mutations in critical genes often …
Two novel fish paralogs provide insights into the Rid family of imine deaminases active in pre-empting enamine/imine metabolic damage
S Digiovanni, C Visentin, G Degani, A Barbiroli… - Scientific Reports, 2020 - nature.com
Abstract Reactive Intermediate Deaminase (Rid) protein superfamily includes eight families
among which the RidA is conserved in all domains of life. RidA proteins accelerate the …
among which the RidA is conserved in all domains of life. RidA proteins accelerate the …