[HTML][HTML] Implementing and testing the multispecies coalescent model: a valuable paradigm for phylogenomics
In recent articles published in Molecular Phylogenetics and Evolution, Mark Springer and
John Gatesy (S&G) present numerous criticisms of recent implementations and testing of the …
John Gatesy (S&G) present numerous criticisms of recent implementations and testing of the …
Gene tree discordance, phylogenetic inference and the multispecies coalescent
The field of phylogenetics is entering a new era in which trees of historical relationships
between species are increasingly inferred from multilocus and genomic data. A major …
between species are increasingly inferred from multilocus and genomic data. A major …
Cryptic and abundant marine viruses at the evolutionary origins of Earth's RNA virome
Whereas DNA viruses are known to be abundant, diverse, and commonly key ecosystem
players, RNA viruses are insufficiently studied outside disease settings. In this study, we …
players, RNA viruses are insufficiently studied outside disease settings. In this study, we …
Contentious relationships in phylogenomic studies can be driven by a handful of genes
Phylogenomic studies have resolved countless branches of the tree of life, but remain
strongly contradictory on certain, contentious relationships. Here, we use a maximum …
strongly contradictory on certain, contentious relationships. Here, we use a maximum …
Genomic data provide insights into the classification of extant termites
The higher classification of termites requires substantial revision as the Neoisoptera, the
most diverse termite lineage, comprise many paraphyletic and polyphyletic higher taxa …
most diverse termite lineage, comprise many paraphyletic and polyphyletic higher taxa …
Resolution of the ordinal phylogeny of mosses using targeted exons from organellar and nuclear genomes
Mosses are a highly diverse lineage of land plants, whose diversification, spanning at least
400 million years, remains phylogenetically ambiguous due to the lack of fossils, massive …
400 million years, remains phylogenetically ambiguous due to the lack of fossils, massive …
The evolutionary history of termites as inferred from 66 mitochondrial genomes
Termites have colonized many habitats and are among the most abundant animals in
tropical ecosystems, which they modify considerably through their actions. The timing of their …
tropical ecosystems, which they modify considerably through their actions. The timing of their …
The dynamics of incomplete lineage sorting across the ancient adaptive radiation of neoavian birds
The diversification of neoavian birds is one of the most rapid adaptive radiations of extant
organisms. Recent whole-genome sequence analyses have much improved the resolution …
organisms. Recent whole-genome sequence analyses have much improved the resolution …
A phylogeny of birds based on over 1,500 loci collected by target enrichment and high-throughput sequencing
Evolutionary relationships among birds in Neoaves, the clade comprising the vast majority of
avian diversity, have vexed systematists due to the ancient, rapid radiation of numerous …
avian diversity, have vexed systematists due to the ancient, rapid radiation of numerous …
Ultraconserved elements are novel phylogenomic markers that resolve placental mammal phylogeny when combined with species-tree analysis
Phylogenomics offers the potential to fully resolve the Tree of Life, but increasing genomic
coverage also reveals conflicting evolutionary histories among genes, demanding new …
coverage also reveals conflicting evolutionary histories among genes, demanding new …