Trimming the genomic fat: minimising and re-functionalising genomes using synthetic biology

X Xu, F Meier, BA Blount, IS Pretorius, T Ellis… - Nature …, 2023 - nature.com
Naturally evolved organisms typically have large genomes that enable their survival and
growth under various conditions. However, the complexity of genomes often precludes our …

Microbial experimental evolution–a proving ground for evolutionary theory and a tool for discovery

MJ McDonald - EMBO reports, 2019 - embopress.org
Microbial experimental evolution uses controlled laboratory populations to study the
mechanisms of evolution. The molecular analysis of evolved populations enables empirical …

[HTML][HTML] Functional unknomics: Systematic screening of conserved genes of unknown function

JJ Rocha, SA Jayaram, TJ Stevens, N Muschalik… - PLoS …, 2023 - journals.plos.org
The human genome encodes approximately 20,000 proteins, many still uncharacterised. It
has become clear that scientific research tends to focus on well-studied proteins, leading to …

[LIVRE][B] Ecological speciation

P Nosil - 2012 - books.google.com
The origin of biological diversity, via the formation of new species, can be inextricably linked
to adaptation to the ecological environment. Specifically, ecological processes are central to …

The Ecoresponsive Genome of Daphnia pulex

JK Colbourne, ME Pfrender, D Gilbert, WK Thomas… - Science, 2011 - science.org
We describe the draft genome of the microcrustacean Daphnia pulex, which is only 200
megabases and contains at least 30,907 genes. The high gene count is a consequence of …

Systematic exploration of essential yeast gene function with temperature-sensitive mutants

Z Li, FJ Vizeacoumar, S Bahr, J Li, J Warringer… - Nature …, 2011 - nature.com
Conditional temperature-sensitive (ts) mutations are valuable reagents for studying essential
genes in the yeast Saccharomyces cerevisiae. We constructed 787 ts strains, covering 497 …

Surprisingly diverged populations of Saccharomyces cerevisiae in natural environments remote from human activity

QM Wang, WQ Liu, G Liti, SA Wang… - Molecular ecology, 2012 - Wiley Online Library
The budding yeast, S accharomyces cerevisiae, is a leading system in genetics, genomics
and molecular biology and is becoming a powerful tool to illuminate ecological and …

Uncovering biological network function via graphlet degree signatures

T Milenković, N Pržulj - Cancer informatics, 2008 - journals.sagepub.com
Motivation Proteins are essential macromolecules of life and thus understanding their
function is of great importance. The number of functionally unclassified proteins is large …

Yeast evolutionary genomics

B Dujon - Nature Reviews Genetics, 2010 - nature.com
Over the past few years, genome sequences have become available from an increasing
range of yeast species, which has led to notable advances in our understanding of …

Genomic reaction norms: using integrative biology to understand molecular mechanisms of phenotypic plasticity

N Aubin‐Horth, SCP Renn - Molecular ecology, 2009 - Wiley Online Library
Phenotypic plasticity is the development of different phenotypes from a single genotype,
depending on the environment. Such plasticity is a pervasive feature of life, is observed for …