Revealing lncRNA structures and interactions by sequencing-based approaches
Long noncoding RNAs (lncRNAs) have emerged as significant players in almost every level
of gene function and regulation. Thus, characterizing the structures and interactions of …
of gene function and regulation. Thus, characterizing the structures and interactions of …
Rock, scissors, paper: How RNA structure informs function
RNA can fold back on itself to adopt a wide range of structures. These range from relatively
simple hairpins to intricate 3D folds and can be accompanied by regulatory interactions with …
simple hairpins to intricate 3D folds and can be accompanied by regulatory interactions with …
Analyses of non-coding somatic drivers in 2,658 cancer whole genomes
The discovery of drivers of cancer has traditionally focused on protein-coding genes,,–. Here
we present analyses of driver point mutations and structural variants in non-coding regions …
we present analyses of driver point mutations and structural variants in non-coding regions …
A pan-cancer analysis of synonymous mutations
Synonymous mutations have been viewed as silent mutations, since they only affect the
DNA and mRNA, but not the amino acid sequence of the resulting protein. Nonetheless …
DNA and mRNA, but not the amino acid sequence of the resulting protein. Nonetheless …
lncRNASNP2: an updated database of functional SNPs and mutations in human and mouse lncRNAs
Long non-coding RNAs (lncRNAs) are emerging as important regulators in different
biological processes through various ways. Because the related data, especially mutations …
biological processes through various ways. Because the related data, especially mutations …
OncodriveFML: a general framework to identify coding and non-coding regions with cancer driver mutations
Distinguishing the driver mutations from somatic mutations in a tumor genome is one of the
major challenges of cancer research. This challenge is more acute and far from solved for …
major challenges of cancer research. This challenge is more acute and far from solved for …
Implications of SARS-CoV-2 mutations for genomic RNA structure and host microRNA targeting
The SARS-CoV-2 virus is a recently-emerged zoonotic pathogen already well adapted to
transmission and replication in humans. Although the mutation rate is limited, recently …
transmission and replication in humans. Although the mutation rate is limited, recently …
Single nucleotide variations: biological impact and theoretical interpretation
Genome‐wide association studies (GWAS) and whole‐exome sequencing (WES) generate
massive amounts of genomic variant information, and a major challenge is to identify which …
massive amounts of genomic variant information, and a major challenge is to identify which …
Discovery of cancer driver long noncoding RNAs across 1112 tumour genomes: new candidates and distinguishing features
A Lanzós, J Carlevaro-Fita, L Mularoni, F Reverter… - Scientific reports, 2017 - nature.com
Long noncoding RNAs (lncRNAs) represent a vast unexplored genetic space that may hold
missing drivers of tumourigenesis, but few such “driver lncRNAs” are known. Until now, they …
missing drivers of tumourigenesis, but few such “driver lncRNAs” are known. Until now, they …
Simultaneous DNA and RNA map** of somatic mitochondrial mutations across diverse human cancers
Somatic mutations in the nuclear genome are required for tumor formation, but the functional
consequences of somatic mitochondrial DNA (mtDNA) mutations are less understood. Here …
consequences of somatic mitochondrial DNA (mtDNA) mutations are less understood. Here …