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Polymer translocation: the first two decades and the recent diversification
Probably no other field of statistical physics at the borderline of soft matter and biological
physics has caused such a flurry of papers as polymer translocation since the 1994 …
physics has caused such a flurry of papers as polymer translocation since the 1994 …
Single-polymer dynamics under constraints: scaling theory and computer experiment
A Milchev - Journal of Physics: Condensed Matter, 2011 - iopscience.iop.org
The relaxation, diffusion and translocation dynamics of single linear polymer chains in
confinement is briefly reviewed with emphasis on the comparison between theoretical …
confinement is briefly reviewed with emphasis on the comparison between theoretical …
Unifying model of driven polymer translocation
We present a Brownian dynamics model of driven polymer translocation, in which
nonequilibrium memory effects arising from tension propagation (TP) along the cis side …
nonequilibrium memory effects arising from tension propagation (TP) along the cis side …
Sucking genes into pores: Insight into driven translocation
T Sakaue - Physical Review E—Statistical, Nonlinear, and Soft …, 2010 - APS
Flexible polymers such as long DNA, RNA molecules, and proteins, can pass through a
narrow pore whose size is comparable to their molecular thickness. We highlight the …
narrow pore whose size is comparable to their molecular thickness. We highlight the …
Driven polymer translocation through nanopores: Slow-vs.-fast dynamics
We investigate the dynamics of polymer translocation through nanopores under external
driving by 3D Langevin Dynamics simulations, focusing on the scaling of the average …
driving by 3D Langevin Dynamics simulations, focusing on the scaling of the average …
Influence of non-universal effects on dynamical scaling in driven polymer translocation
We study the dynamics of driven polymer translocation using both molecular dynamics (MD)
simulations and a theoretical model based on the non-equilibrium tension propagation on …
simulations and a theoretical model based on the non-equilibrium tension propagation on …
Iso-flux tension propagation theory of driven polymer translocation: The role of initial configurations
We investigate the dynamics of pore-driven polymer translocation by theoretical analysis
and molecular dynamics (MD) simulations. Using the tension propagation theory within the …
and molecular dynamics (MD) simulations. Using the tension propagation theory within the …
Process time distribution of driven polymer transport
T Saito, T Sakaue - Physical Review E—Statistical, Nonlinear, and Soft …, 2012 - APS
We discuss the temporal distribution of dynamic processes in driven polymer transport
inherent to flexible chains due to stochastic tension propagation. The stochasticity originates …
inherent to flexible chains due to stochastic tension propagation. The stochasticity originates …
Dynamical diagram and scaling in polymer driven translocation
T Saito, T Sakaue - The European Physical Journal E, 2011 - Springer
By analyzing the real space non-equilibrium dynamics of polymers, we elucidate the physics
of driven translocation and propose its dynamical scaling scenario analogous to that in the …
of driven translocation and propose its dynamical scaling scenario analogous to that in the …
Scaling exponents of forced polymer translocation through a nanopore
We investigate several properties of a translocating homopolymer through a thin pore driven
by an external field present inside the pore only using Langevin Dynamics (LD) simulations …
by an external field present inside the pore only using Langevin Dynamics (LD) simulations …