Graph neural networks for materials science and chemistry

P Reiser, M Neubert, A Eberhard, L Torresi… - Communications …, 2022 - nature.com
Abstract Machine learning plays an increasingly important role in many areas of chemistry
and materials science, being used to predict materials properties, accelerate simulations …

Predictive chemistry: machine learning for reaction deployment, reaction development, and reaction discovery

Z Tu, T Stuyver, CW Coley - Chemical science, 2023 - pubs.rsc.org
The field of predictive chemistry relates to the development of models able to describe how
molecules interact and react. It encompasses the long-standing task of computer-aided …

Retrosynthesis prediction with an interpretable deep-learning framework based on molecular assembly tasks

Y Wang, C Pang, Y Wang, J **, J Zhang… - Nature …, 2023 - nature.com
Automating retrosynthesis with artificial intelligence expedites organic chemistry research in
digital laboratories. However, most existing deep-learning approaches are hard to explain …

[HTML][HTML] Small molecules and their impact in drug discovery: A perspective on the occasion of the 125th anniversary of the Bayer Chemical Research Laboratory

H Beck, M Härter, B Haß, C Schmeck, L Baerfacker - Drug Discovery Today, 2022 - Elsevier
The year 2021 marks the 125th anniversary of the Bayer Chemical Research Laboratory in
Wuppertal, Germany. A significant number of prominent small-molecule drugs, from Aspirin …

State-of-the-art augmented NLP transformer models for direct and single-step retrosynthesis

IV Tetko, P Karpov, R Van Deursen, G Godin - Nature communications, 2020 - nature.com
We investigated the effect of different training scenarios on predicting the (retro) synthesis of
chemical compounds using text-like representation of chemical reactions (SMILES) and …

Machine intelligence for chemical reaction space

P Schwaller, AC Vaucher, R Laplaza… - Wiley …, 2022 - Wiley Online Library
Discovering new reactions, optimizing their performance, and extending the synthetically
accessible chemical space are critical drivers for major technological advances and more …

Automation and computer-assisted planning for chemical synthesis

Y Shen, JE Borowski, MA Hardy, R Sarpong… - Nature Reviews …, 2021 - nature.com
The molecules of today—the medicines that cure diseases, the agrochemicals that protect
our crops, the materials that make life convenient—are becoming increasingly sophisticated …

Deep learning driven biosynthetic pathways navigation for natural products with BioNavi-NP

S Zheng, T Zeng, C Li, B Chen, CW Coley… - Nature …, 2022 - nature.com
The complete biosynthetic pathways are unknown for most natural products (NPs), it is thus
valuable to make computer-aided bio-retrosynthesis predictions. Here, a navigable and user …

Graph neural networks for automated de novo drug design

J **ong, Z **ong, K Chen, H Jiang, M Zheng - Drug discovery today, 2021 - Elsevier
Highlights•GNN has attracted wide attention from the field of designing drug molecules.•The
applications of GNN in molecule scoring, molecule generation and optimization, and …

Unified deep learning model for multitask reaction predictions with explanation

J Lu, Y Zhang - Journal of chemical information and modeling, 2022 - ACS Publications
There is significant interest and importance to develop robust machine learning models to
assist organic chemistry synthesis. Typically, task-specific machine learning models for …