Phylogeny and molecular evolution of the green algae

F Leliaert, DR Smith, H Moreau… - Critical reviews in …, 2012 - Taylor & Francis
The green lineage (Viridiplantae) comprises the green algae and their descendants the land
plants, and is one of the major groups of oxygenic photosynthetic eukaryotes. Current …

Rewriting the genetic code

T Mukai, MJ Lajoie, M Englert… - Annual review of …, 2017 - annualreviews.org
The genetic code—the language used by cells to translate their genomes into proteins that
perform many cellular functions—is highly conserved throughout natural life. Rewriting the …

Neoproterozoic origin and multiple transitions to macroscopic growth in green seaweeds

A Del Cortona, CJ Jackson, F Bucchini… - Proceedings of the …, 2020 - pnas.org
The Neoproterozoic Era records the transition from a largely bacterial to a predominantly
eukaryotic phototrophic world, creating the foundation for the complex benthic ecosystems …

An unprecedented non-canonical nuclear genetic code with all three termination codons reassigned as sense codons

K Záhonová, AY Kostygov, T Ševčíková, V Yurchenko… - Current biology, 2016 - cell.com
A limited number of non-canonical genetic codes have been described in eukaryotic nuclear
genomes. Most involve reassignment of one or two termination codons as sense ones [1–4] …

Obligately phagotrophic aphelids turned out to branch with the earliest-diverging fungi

SA Karpov, KV Mikhailov, GS Mirzaeva… - Protist, 2013 - Elsevier
Reconstructing the early evolution of fungi and metazoans, two of the kingdoms of
multicellular eukaryotes thriving on earth, is a challenging task for biologists. Among extant …

Transitions between marine and freshwater environments provide new clues about the origins of multicellular plants and algae

SM Dittami, S Heesch, JL Olsen… - Journal of phycology, 2017 - Wiley Online Library
Marine–freshwater and freshwater–marine transitions have been key events in the evolution
of life, and most major groups of organisms have independently undergone such events at …

TRAPID 2.0: a web application for taxonomic and functional analysis of de novo transcriptomes

F Bucchini, A Del Cortona, Ł Kreft, A Botzki… - Nucleic acids …, 2021 - academic.oup.com
Advances in high-throughput sequencing have resulted in a massive increase of RNA-Seq
transcriptome data. However, the promise of rapid gene expression profiling in a specific …

The chloroplast genomes of Bryopsis plumosa and Tydemania expeditiones (Bryopsidales, Chlorophyta): compact genomes and genes of bacterial origin

F Leliaert, JM Lopez-Bautista - BMC genomics, 2015 - Springer
Abstract Background Species of Bryopsidales form ecologically important components of
seaweed communities worldwide. These siphonous macroalgae are composed of a single …

Single-cell transcriptomics reveal a correlation between genome architecture and gene family evolution in ciliates

Y Yan, XX Maurer-Alcalá, R Knight… - MBio, 2019 - journals.asm.org
Ciliates, a eukaryotic clade that is over 1 billion years old, are defined by division of genome
function between transcriptionally inactive germline micronuclei and functional somatic …

The plastid genome in Cladophorales green algae is encoded by hairpin chromosomes

A Del Cortona, F Leliaert, KA Bogaert, M Turmel… - Current Biology, 2017 - cell.com
Virtually all plastid (chloroplast) genomes are circular double-stranded DNA molecules,
typically between 100 and 200 kb in size and encoding circa 80–250 genes. Exceptions to …