<? mode longauthoraffil?> The Human Phenotype Ontology in 2024: phenotypes around the world

MA Gargano, N Matentzoglu, B Coleman… - Nucleic acids …, 2024 - academic.oup.com
Abstract The Human Phenotype Ontology (HPO) is a widely used resource that
comprehensively organizes and defines the phenotypic features of human disease …

The Monarch Initiative in 2024: an analytic platform integrating phenotypes, genes and diseases across species

TE Putman, K Schaper, N Matentzoglu… - Nucleic acids …, 2024 - academic.oup.com
Bridging the gap between genetic variations, environmental determinants, and phenotypic
outcomes is critical for supporting clinical diagnosis and understanding mechanisms of …

Building integrated plant health surveillance: a proactive research agenda for anticipating and mitigating disease and pest emergence

S Soubeyrand, A Estoup, A Cruaud… - CABI Agriculture and …, 2024 - Springer
In an era marked by rapid global changes, the reinforcement and modernization of plant
health surveillance systems have become imperative. Sixty-five scientists present here a …

Results of the ontology alignment evaluation initiative 2020

MAN Pour, A Algergawy, R Amini, D Faria… - … Workshop on Ontology …, 2020 - hal.science
The Ontology Alignment Evaluation Initiative (OAEI) aims at comparing ontology matching
systems on precisely defined test cases. These test cases can be based on ontologies of …

Ontology Development Kit: a toolkit for building, maintaining and standardizing biomedical ontologies

N Matentzoglu, D Goutte-Gattat, SZK Tan, JP Balhoff… - Database, 2022 - academic.oup.com
Similar to managing software packages, managing the ontology life cycle involves multiple
complex workflows such as preparing releases, continuous quality control checking and …

Mouse Genome Informatics: an integrated knowledgebase system for the laboratory mouse

RM Baldarelli, CL Smith, M Ringwald, JE Richardson… - Genetics, 2024 - academic.oup.com
Abstract Mouse Genome Informatics (MGI) is a federation of expertly curated information
resources designed to support experimental and computational investigations into genetic …

Unifying the identification of biomedical entities with the Bioregistry

CT Hoyt, M Balk, TJ Callahan, D Domingo-Fernández… - Scientific data, 2022 - nature.com
The standardized identification of biomedical entities is a cornerstone of interoperability,
reuse, and data integration in the life sciences. Several registries have been developed to …

[HTML][HTML] Critical data for critical care: a primer on leveraging electronic health record data for research from society of critical care medicine's panel on data sharing and …

SF Heavner, VK Kumar, W Anderson… - Critical Care …, 2024 - journals.lww.com
A growing body of critical care research draws on real-world data from electronic health
records (EHRs). The bedside clinician has myriad data sources to aid in clinical decision …

Ontologizing health systems data at scale: making translational discovery a reality

TJ Callahan, AL Stefanski, JM Wyrwa, C Zeng… - NPJ Digital …, 2023 - nature.com
Common data models solve many challenges of standardizing electronic health record
(EHR) data but are unable to semantically integrate all of the resources needed for deep …

Ontology repositories and semantic artefact catalogues with the ontoPortal technology

C Jonquet, J Graybeal, S Bouazzouni, M Dorf… - International Semantic …, 2023 - Springer
There is an explosion in the number of ontologies and semantic artefacts being produced in
science. This paper discusses the need for common platforms to receive, host, serve, align …