[HTML][HTML] Long walk to genomics: History and current approaches to genome sequencing and assembly

AM Giani, GR Gallo, L Gianfranceschi… - Computational and …, 2020‏ - Elsevier
Genomes represent the starting point of genetic studies. Since the discovery of DNA
structure, scientists have devoted great efforts to determine their sequence in an exact way …

[HTML][HTML] A revision of subspecies structure of western honey bee Apis mellifera

RA Ilyasov, M Lee, J Takahashi, HW Kwon… - Saudi Journal of …, 2020‏ - Elsevier
The taxonomy of honey bee A. mellifera contains a lot of issues due to the specificity of
population structure, features of biology and resolutions of honey bee subspecies …

BUSCO: assessing genomic data quality and beyond

M Manni, MR Berkeley, M Seppey… - Current …, 2021‏ - Wiley Online Library
Abstract Evaluation of the quality of genomic “data products” such as genome assemblies or
gene sets is of critical importance in order to recognize possible issues and correct them …

Galba: genome annotation with miniprot and AUGUSTUS

T Brůna, H Li, J Guhlin, D Honsel, S Herbold… - BMC …, 2023‏ - Springer
Abstract Background The Earth Biogenome Project has rapidly increased the number of
available eukaryotic genomes, but most released genomes continue to lack annotation of …

Identifying the causes and consequences of assembly gaps using a multiplatform genome assembly of a bird‐of‐paradise

V Peona, MPK Blom, L Xu, R Burri… - Molecular ecology …, 2021‏ - Wiley Online Library
Genome assemblies are currently being produced at an impressive rate by consortia and
individual laboratories. The low costs and increasing efficiency of sequencing technologies …

Thrice out of Asia and the adaptive radiation of the western honey bee

KA Dogantzis, T Tiwari, IM Conflitti, A Dey… - Science …, 2021‏ - science.org
The origin of the western honey bee Apis mellifera has been intensely debated. Addressing
this knowledge gap is essential for understanding the evolution and genetics of one of the …

The gut microbiota affects the social network of honeybees

J Liberti, T Kay, A Quinn, L Kesner, ET Frank… - Nature ecology & …, 2022‏ - nature.com
The gut microbiota influences animal neurodevelopment and behaviour but has not
previously been documented to affect group-level properties of social organisms. Here, we …

Selection and hybridization shaped the rapid spread of African honey bee ancestry in the Americas

E Calfee, MN Agra, MA Palacio, SR Ramírez… - PLoS …, 2020‏ - journals.plos.org
Recent biological invasions offer 'natural'laboratories to understand the genetics and
ecology of adaptation, hybridization, and range limits. One of the most impressive and well …

Diversity and evolution of telomeric motifs and telomere DNA organization in insects

VA Lukhtanov, EA Pazhenkova - Biological Journal of the …, 2023‏ - academic.oup.com
The telomerase mechanism and telomeric motifs are vital for maintaining chromosome
integrity. Their functions are conserved in eukaryotic organisms; therefore, it is not surprising …

Gamete binning: chromosome-level and haplotype-resolved genome assembly enabled by high-throughput single-cell sequencing of gamete genomes

JA Campoy, H Sun, M Goel, WB Jiao, K Folz-Donahue… - Genome biology, 2020‏ - Springer
Generating chromosome-level, haplotype-resolved assemblies of heterozygous genomes
remains challenging. To address this, we developed gamete binning, a method based on …