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TeraChem: A graphical processing unit‐accelerated electronic structure package for large‐scale ab initio molecular dynamics
TeraChem was born in 2008 with the goal of providing fast on‐the‐fly electronic structure
calculations to facilitate ab initio molecular dynamics studies of large biochemical systems …
calculations to facilitate ab initio molecular dynamics studies of large biochemical systems …
C hem S hell—a modular software package for QM/MM simulations
ChemShell is a modular computational chemistry package with a particular focus on hybrid
quantum mechanical/molecular mechanical (QM/MM) simulations. A core set of chemical …
quantum mechanical/molecular mechanical (QM/MM) simulations. A core set of chemical …
Nudged elastic band method for molecular reactions using energy-weighted springs combined with eigenvector following
The climbing image nudged elastic band method (CI-NEB) is used to identify reaction
coordinates and to find saddle points representing transition states of reactions. It can make …
coordinates and to find saddle points representing transition states of reactions. It can make …
A quantitative uncertainty metric controls error in neural network-driven chemical discovery
A quantitative uncertainty metric controls error in neural network-driven chemical discovery -
Chemical Science (RSC Publishing) DOI:10.1039/C9SC02298H Royal Society of Chemistry …
Chemical Science (RSC Publishing) DOI:10.1039/C9SC02298H Royal Society of Chemistry …
Interlayer interactions as design tool for large-pore COFs
Covalent organic frameworks (COFs) with a pore size beyond 5 nm are still rarely seen in
this emerging field. Besides obvious complications such as the elaborated synthesis of large …
this emerging field. Besides obvious complications such as the elaborated synthesis of large …
The photochemical ring-opening of 1, 3-cyclohexadiene imaged by ultrafast electron diffraction
The ultrafast photoinduced ring-opening of 1, 3-cyclohexadiene constitutes a textbook
example of electrocyclic reactions in organic chemistry and a model for photobiological …
example of electrocyclic reactions in organic chemistry and a model for photobiological …
How do preorganized electric fields function in catalytic cycles? The case of the enzyme tyrosine hydroxylase
W Peng, S Yan, X Zhang, L Liao, J Zhang… - Journal of the …, 2022 - ACS Publications
Nature has devised intrinsic electric fields (IEFs) that are engaged in electrostatic catalysis of
enzymes. But, how does the IEF target its function in enzymes that involve several reaction …
enzymes. But, how does the IEF target its function in enzymes that involve several reaction …
Resolving transition metal chemical space: Feature selection for machine learning and structure–property relationships
Machine learning (ML) of quantum mechanical properties shows promise for accelerating
chemical discovery. For transition metal chemistry where accurate calculations are …
chemical discovery. For transition metal chemistry where accurate calculations are …
Machine learning based energy-free structure predictions of molecules, transition states, and solids
The computational prediction of atomistic structure is a long-standing problem in physics,
chemistry, materials, and biology. Conventionally, force-fields or ab initio methods determine …
chemistry, materials, and biology. Conventionally, force-fields or ab initio methods determine …
Accurate multiobjective design in a space of millions of transition metal complexes with neural-network-driven efficient global optimization
The accelerated discovery of materials for real world applications requires the achievement
of multiple design objectives. The multidimensional nature of the search necessitates …
of multiple design objectives. The multidimensional nature of the search necessitates …