Myofilament-associated proteins with intrinsic disorder (MAPIDs) and their resolution by computational modeling

B Sun, PM Kekenes-Huskey - Quarterly reviews of biophysics, 2023 - cambridge.org
The cardiac sarcomere is a cellular structure in the heart that enables muscle cells to
contract. Dozens of proteins belong to the cardiac sarcomere, which work in tandem to …

A model study of sequential enzyme reactions and electrostatic channeling

C Eun, PM Kekenes-Huskey, VT Metzger… - The Journal of …, 2014 - pubs.aip.org
We study models of two sequential enzyme-catalyzed reactions as a basic functional
building block for coupled biochemical networks. We investigate the influence of enzyme …

Structural and dynamic basis of substrate permissiveness in hydroxycinnamoyltransferase (HCT)

YC Chiang, O Levsh, CK Lam, JK Weng… - PLoS computational …, 2018 - journals.plos.org
Substrate permissiveness has long been regarded as the raw materials for the evolution of
new enzymatic functions. In land plants, hydroxycinnamoyltransferase (HCT) is an essential …

Quantifying the influence of the crowded cytoplasm on small molecule diffusion

PM Kekenes-Huskey, CE Scott… - The Journal of Physical …, 2016 - ACS Publications
Cytosolic crowding can influence the thermodynamics and kinetics of in vivo chemical
reactions. Most significantly, proteins and nucleic acid crowders reduce the accessible …

[책][B] 4D Printing, Volume 1: Between Disruptive Research and Industrial Applications

F Demoly, JC André - 2022 - books.google.com
Any time objects and their (self-) organization are to be put into use, their models and
methods of thinking as well as their designing and manufacturing need to be reinvented. 4D …

Structural changes beyond the EF-hand contribute to apparent calcium binding affinities: insights from parvalbumins

K Immadisetty, B Sun… - The Journal of Physical …, 2021 - ACS Publications
Members of the parvalbumin (PV) family of calcium (Ca2+) binding proteins (CBPs) share a
relatively high level of sequence similarity. However, their Ca2+ affinities and selectivities …

Computational modeling of subcellular transport and signaling

J Hake, PM Kekenes-Huskey, AD McCulloch - Current opinion in structural …, 2014 - Elsevier
Highlights•Electron and light microscopy yield 3D reconstructions of signaling
microdomains.•Imaging techniques provide further high-resolution structural data suitable …

Co-localization and confinement of ecto-nucleotidases modulate extracellular adenosine nucleotide distributions

H Rahmaninejad, T Pace, S Bhatt, B Sun… - PLoS computational …, 2020 - journals.plos.org
Nucleotides comprise small molecules that perform critical signaling roles in biological
systems. Adenosine-based nucleotides, including adenosine tri-, di-, and mono-phosphate …

Influence of neighboring reactive particles on diffusion-limited reactions

C Eun, PM Kekenes-Huskey… - The Journal of Chemical …, 2013 - pubs.aip.org
Competition between reactive species is commonplace in typical chemical reactions.
Specifically the primary reaction between a substrate and its target enzyme may be altered …

Molecular and subcellular-scale modeling of nucleotide diffusion in the cardiac myofilament lattice

PM Kekenes-Huskey, T Liao, AK Gillette, JE Hake… - Biophysical journal, 2013 - cell.com
Contractile function of cardiac cells is driven by the sliding displacement of myofilaments
powered by the cycling myosin crossbridges. Critical to this process is the availability of ATP …