Advancing computer-aided drug discovery (CADD) by big data and data-driven machine learning modeling
Highlights•Drug discovery has been advanced to a big data era with a large amount of
public data sources available.•Ten V features (volume, velocity, variety, veracity, validity …
public data sources available.•Ten V features (volume, velocity, variety, veracity, validity …
From correlation to causation: analysis of metabolomics data using systems biology approaches
Introduction Metabolomics is a well-established tool in systems biology, especially in the top–
down approach. Metabolomics experiments often results in discovery studies that provide …
down approach. Metabolomics experiments often results in discovery studies that provide …
MEMOTE for standardized genome-scale metabolic model testing
To the Editor—Reconstructing metabolic reaction networks enables the development of
testable hypotheses of an organism's metabolism under different conditions 1. State-of-the …
testable hypotheses of an organism's metabolism under different conditions 1. State-of-the …
BioModels—15 years of sharing computational models in life science
RS Malik-Sheriff, M Glont, TVN Nguyen… - Nucleic acids …, 2020 - academic.oup.com
Computational modelling has become increasingly common in life science research. To
provide a platform to support universal sharing, easy accessibility and model reproducibility …
provide a platform to support universal sharing, easy accessibility and model reproducibility …
Guidelines for the use and interpretation of assays for monitoring autophagy (4th edition)1
DJ Klionsky, AK Abdel-Aziz, S Abdelfatah, M Abdellatif… - autophagy, 2021 - Taylor & Francis
In 2008, we published the first set of guidelines for standardizing research in autophagy.
Since then, this topic has received increasing attention, and many scientists have entered …
Since then, this topic has received increasing attention, and many scientists have entered …
DNA damage during S-phase mediates the proliferation-quiescence decision in the subsequent G1 via p21 expression
Following DNA damage caused by exogenous sources, such as ionizing radiation, the
tumour suppressor p53 mediates cell cycle arrest via expression of the CDK inhibitor, p21 …
tumour suppressor p53 mediates cell cycle arrest via expression of the CDK inhibitor, p21 …
Predicting perturbation patterns from the topology of biological networks
M Santolini, AL Barabási - Proceedings of the National …, 2018 - National Acad Sciences
High-throughput technologies, offering an unprecedented wealth of quantitative data
underlying the makeup of living systems, are changing biology. Notably, the systematic …
underlying the makeup of living systems, are changing biology. Notably, the systematic …
Personalized whole‐body models integrate metabolism, physiology, and the gut microbiome
Comprehensive molecular‐level models of human metabolism have been generated on a
cellular level. However, models of whole‐body metabolism have not been established as …
cellular level. However, models of whole‐body metabolism have not been established as …
Recon 2.2: from reconstruction to model of human metabolism
Introduction The human genome-scale metabolic reconstruction details all known metabolic
reactions occurring in humans, and thereby holds substantial promise for studying complex …
reactions occurring in humans, and thereby holds substantial promise for studying complex …
Length‐independent telomere damage drives post‐mitotic cardiomyocyte senescence
R Anderson, A Lagnado, D Maggiorani… - The EMBO …, 2019 - embopress.org
Ageing is the biggest risk factor for cardiovascular disease. Cellular senescence, a process
driven in part by telomere shortening, has been implicated in age‐related tissue dysfunction …
driven in part by telomere shortening, has been implicated in age‐related tissue dysfunction …