The population genetics of pathogenic Escherichia coli
Escherichia coli is a commensal of the vertebrate gut that is increasingly involved in various
intestinal and extra-intestinal infections as an opportunistic pathogen. Numerous pathotypes …
intestinal and extra-intestinal infections as an opportunistic pathogen. Numerous pathotypes …
The emergence of adaptive laboratory evolution as an efficient tool for biological discovery and industrial biotechnology
Harnessing the process of natural selection to obtain and understand new microbial
phenotypes has become increasingly possible due to advances in culturing techniques …
phenotypes has become increasingly possible due to advances in culturing techniques …
Mutation rate of SARS-CoV-2 and emergence of mutators during experimental evolution
Background and objectives To understand how organisms evolve, it is fundamental to study
how mutations emerge and establish. Here, we estimated the rate of mutation accumulation …
how mutations emerge and establish. Here, we estimated the rate of mutation accumulation …
Evolutionary genomics can improve prediction of species' responses to climate change
Global climate change (GCC) increasingly threatens biodiversity through the loss of species,
and the transformation of entire ecosystems. Many species are challenged by the pace of …
and the transformation of entire ecosystems. Many species are challenged by the pace of …
A comprehensive, CRISPR-based functional analysis of essential genes in bacteria
Essential gene functions underpin the core reactions required for cell viability, but their
contributions and relationships are poorly studied in vivo. Using CRISPR interference, we …
contributions and relationships are poorly studied in vivo. Using CRISPR interference, we …
Escherichia coli as a host for metabolic engineering
Over the past century, Escherichia coli has become one of the best studied organisms on
earth. Features such as genetic tractability, favorable growth conditions, well characterized …
earth. Features such as genetic tractability, favorable growth conditions, well characterized …
Ecological genomics of local adaptation
It is increasingly important to improve our understanding of the genetic basis of local
adaptation because of its relevance to climate change, crop and animal production, and …
adaptation because of its relevance to climate change, crop and animal production, and …
Genome-wide map** of mutations at single-nucleotide resolution for protein, metabolic and genome engineering
Improvements in DNA synthesis and sequencing have underpinned comprehensive
assessment of gene function in bacteria and eukaryotes. Genome-wide analyses require …
assessment of gene function in bacteria and eukaryotes. Genome-wide analyses require …
Tempo and mode of genome evolution in a 50,000-generation experiment
Adaptation by natural selection depends on the rates, effects and interactions of many
mutations, making it difficult to determine what proportion of mutations in an evolving lineage …
mutations, making it difficult to determine what proportion of mutations in an evolving lineage …
The effects of temperature on cellular physiology
Temperature impacts biological systems across all length and timescales. Cells and the
enzymes that comprise them respond to temperature fluctuations on short timescales, and …
enzymes that comprise them respond to temperature fluctuations on short timescales, and …