New insights into genome folding by loop extrusion from inducible degron technologies

E de Wit, EP Nora - Nature Reviews Genetics, 2023 - nature.com
Chromatin folds into dynamic loops that often span hundreds of kilobases and physically
wire distant loci together for gene regulation. These loops are continuously created …

Mechanisms of long non-coding RNA in breast cancer

B Giuliani, C Tordonato, F Nicassio - International journal of molecular …, 2023 - mdpi.com
The landscape of pervasive transcription in eukaryotic genomes has made space for the
identification of thousands of transcripts that are difficult to frame in a specific functional …

Co-essentiality analysis identifies PRR12 as a cohesin interacting protein and contributor to genomic integrity

AL Nguyen, EM Smith, IM Cheeseman - Developmental Cell, 2024 - cell.com
The cohesin complex is critical for genome organization and regulation, relying on
specialized co-factors to mediate its diverse functional activities. Here, by analyzing patterns …

PQBP3 prevents senescence by suppressing PSME3-mediated proteasomal Lamin B1 degradation

Y Yoshioka, Y Huang, X **, KX Ngo, T Kumaki… - The EMBO …, 2024 - embopress.org
Senescence of nondividing neurons remains an immature concept, with especially the
regulatory molecular mechanisms of senescence-like phenotypes and the role of proteins …

CTCF and cohesin promote focal detachment of DNA from the nuclear lamina

T van Schaik, NQ Liu, SG Manzo, D Peric-Hupkes… - Genome Biology, 2022 - Springer
Abstract Background Lamina-associated domains (LADs) are large genomic regions that
are positioned at the nuclear lamina. It has remained largely unclear what drives the …

[PDF][PDF] Large-scale phenogenomic analysis of human cancers uncovers frequent alterations affecting SMC5/6 complex components in breast cancer

S Roy, A Zaker, A Mer, D D'Amours - NAR cancer, 2023 - academic.oup.com
Cancer cells often experience large-scale alterations in genome architecture because of
DNA damage and replication stress. Whether mutations in core regulators of chromosome …

Regulating epithelial-mesenchymal plasticity from 3D genome organization

QY Pang, YC Chiu, RYJ Huang - Communications Biology, 2024 - nature.com
Epithelial-mesenchymal transition (EMT) is a dynamic process enabling polarized epithelial
cells to acquire mesenchymal features implicated in development and carcinoma …

Cohesin and CTCF complexes mediate contacts in chromatin loops depending on nucleosome positions

A Attou, T Zülske, G Wedemann - Biophysical Journal, 2022 - cell.com
The spatial organization of the eukaryotic genome plays an important role in regulating
transcriptional activity. In the nucleus, chromatin forms loops that assemble into fundamental …

Genome folding by cohesion

S Qi, Z Shi, H Yu - Current Opinion in Genetics & Development, 2025 - Elsevier
Chromosomes in eukaryotic cells undergo compaction at multiple levels and are folded into
hierarchical structures to fit into the nucleus with limited dimensions. Three-dimensional …

Decreasing Wapl dosage partially corrects embryonic growth and brain transcriptome phenotypes in Nipbl+/− embryos

CM Kean, CJ Tracy, A Mitra, B Rahat… - Science …, 2022 - science.org
Cohesin rings interact with DNA and modulate the expression of thousands of genes. NIPBL
loads cohesin onto chromosomes, and WAPL takes it off. Haploinsufficiency for NIPBL …