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New insights into genome folding by loop extrusion from inducible degron technologies
Chromatin folds into dynamic loops that often span hundreds of kilobases and physically
wire distant loci together for gene regulation. These loops are continuously created …
wire distant loci together for gene regulation. These loops are continuously created …
Mechanisms of long non-coding RNA in breast cancer
B Giuliani, C Tordonato, F Nicassio - International journal of molecular …, 2023 - mdpi.com
The landscape of pervasive transcription in eukaryotic genomes has made space for the
identification of thousands of transcripts that are difficult to frame in a specific functional …
identification of thousands of transcripts that are difficult to frame in a specific functional …
Co-essentiality analysis identifies PRR12 as a cohesin interacting protein and contributor to genomic integrity
The cohesin complex is critical for genome organization and regulation, relying on
specialized co-factors to mediate its diverse functional activities. Here, by analyzing patterns …
specialized co-factors to mediate its diverse functional activities. Here, by analyzing patterns …
PQBP3 prevents senescence by suppressing PSME3-mediated proteasomal Lamin B1 degradation
Y Yoshioka, Y Huang, X **, KX Ngo, T Kumaki… - The EMBO …, 2024 - embopress.org
Senescence of nondividing neurons remains an immature concept, with especially the
regulatory molecular mechanisms of senescence-like phenotypes and the role of proteins …
regulatory molecular mechanisms of senescence-like phenotypes and the role of proteins …
CTCF and cohesin promote focal detachment of DNA from the nuclear lamina
Abstract Background Lamina-associated domains (LADs) are large genomic regions that
are positioned at the nuclear lamina. It has remained largely unclear what drives the …
are positioned at the nuclear lamina. It has remained largely unclear what drives the …
[PDF][PDF] Large-scale phenogenomic analysis of human cancers uncovers frequent alterations affecting SMC5/6 complex components in breast cancer
Cancer cells often experience large-scale alterations in genome architecture because of
DNA damage and replication stress. Whether mutations in core regulators of chromosome …
DNA damage and replication stress. Whether mutations in core regulators of chromosome …
Regulating epithelial-mesenchymal plasticity from 3D genome organization
QY Pang, YC Chiu, RYJ Huang - Communications Biology, 2024 - nature.com
Epithelial-mesenchymal transition (EMT) is a dynamic process enabling polarized epithelial
cells to acquire mesenchymal features implicated in development and carcinoma …
cells to acquire mesenchymal features implicated in development and carcinoma …
Cohesin and CTCF complexes mediate contacts in chromatin loops depending on nucleosome positions
The spatial organization of the eukaryotic genome plays an important role in regulating
transcriptional activity. In the nucleus, chromatin forms loops that assemble into fundamental …
transcriptional activity. In the nucleus, chromatin forms loops that assemble into fundamental …
Genome folding by cohesion
Chromosomes in eukaryotic cells undergo compaction at multiple levels and are folded into
hierarchical structures to fit into the nucleus with limited dimensions. Three-dimensional …
hierarchical structures to fit into the nucleus with limited dimensions. Three-dimensional …
Decreasing Wapl dosage partially corrects embryonic growth and brain transcriptome phenotypes in Nipbl+/− embryos
Cohesin rings interact with DNA and modulate the expression of thousands of genes. NIPBL
loads cohesin onto chromosomes, and WAPL takes it off. Haploinsufficiency for NIPBL …
loads cohesin onto chromosomes, and WAPL takes it off. Haploinsufficiency for NIPBL …