Mycobiome diversity: high-throughput sequencing and identification of fungi
Fungi are major ecological players in both terrestrial and aquatic environments by cycling
organic matter and channelling nutrients across trophic levels. High-throughput sequencing …
organic matter and channelling nutrients across trophic levels. High-throughput sequencing …
From hairballs to hypotheses–biological insights from microbial networks
Microbial networks are an increasingly popular tool to investigate microbial community
structure, as they integrate multiple types of information and may represent systems-level …
structure, as they integrate multiple types of information and may represent systems-level …
High-throughput amplicon sequencing of the full-length 16S rRNA gene with single-nucleotide resolution
Targeted PCR amplification and high-throughput sequencing (amplicon sequencing) of 16S
rRNA gene fragments is widely used to profile microbial communities. New long-read …
rRNA gene fragments is widely used to profile microbial communities. New long-read …
Perspectives and benefits of high-throughput long-read sequencing in microbial ecology
Short-read, high-throughput sequencing (HTS) methods have yielded numerous important
insights into microbial ecology and function. Yet, in many instances short-read HTS …
insights into microbial ecology and function. Yet, in many instances short-read HTS …
The not-so-sterile womb: evidence that the human fetus is exposed to bacteria prior to birth
The human microbiome includes trillions of bacteria, many of which play a vital role in host
physiology. Numerous studies have now detected bacterial DNA in first-pass meconium and …
physiology. Numerous studies have now detected bacterial DNA in first-pass meconium and …
High-accuracy long-read amplicon sequences using unique molecular identifiers with Nanopore or PacBio sequencing
High-throughput amplicon sequencing of large genomic regions remains challenging for
short-read technologies. Here, we report a high-throughput amplicon sequencing approach …
short-read technologies. Here, we report a high-throughput amplicon sequencing approach …
Interpretations of environmental microbial community studies are biased by the selected 16S rRNA (gene) amplicon sequencing pipeline
One of the major methods to identify microbial community composition, to unravel microbial
population dynamics, and to explore microbial diversity in environmental samples is high …
population dynamics, and to explore microbial diversity in environmental samples is high …
PacBio metabarcoding of Fungi and other eukaryotes: errors, biases and perspectives
L Tedersoo, A Tooming‐Klunderud… - New Phytologist, 2018 - Wiley Online Library
Second‐generation, high‐throughput sequencing methods have greatly improved our
understanding of the ecology of soil microorganisms, yet the short barcodes (< 500 bp) …
understanding of the ecology of soil microorganisms, yet the short barcodes (< 500 bp) …
Fusarium head blight from a microbiome perspective
The fungal genus Fusarium causes several diseases in cereals, including Fusarium head
blight (FHB). A number of Fusarium species are involved in disease development and …
blight (FHB). A number of Fusarium species are involved in disease development and …
Soil microbiota manipulation and its role in suppressing soil-borne plant pathogens in organic farming systems under the light of microbiome-assisted strategies
U De Corato - Chemical and Biological Technologies in Agriculture, 2020 - Springer
Soil microbiota plays a key role in suppressing soil-borne plant pathogens improving the
natural soil suppressiveness. Microbiome disturbance triggers specific perturbation to …
natural soil suppressiveness. Microbiome disturbance triggers specific perturbation to …