Patient-derived xenograft models in cancer therapy: technologies and applications

Y Liu, W Wu, C Cai, H Zhang, H Shen… - Signal Transduction and …, 2023 - nature.com
Patient-derived xenograft (PDX) models, in which tumor tissues from patients are implanted
into immunocompromised or humanized mice, have shown superiority in recapitulating the …

Machine learning approaches to drug response prediction: challenges and recent progress

G Adam, L Rampášek, Z Safikhani, P Smirnov… - NPJ precision …, 2020 - nature.com
Cancer is a leading cause of death worldwide. Identifying the best treatment using
computational models to personalize drug response prediction holds great promise to …

[HTML][HTML] Proteogenomic characterization of pancreatic ductal adenocarcinoma

L Cao, C Huang, DC Zhou, Y Hu, TM Lih, SR Savage… - Cell, 2021 - cell.com
Pancreatic ductal adenocarcinoma (PDAC) is a highly aggressive cancer with poor patient
survival. Toward understanding the underlying molecular alterations that drive PDAC …

Artificial intelligence, machine learning, and drug repurposing in cancer

Z Tanoli, M Vähä-Koskela… - Expert opinion on drug …, 2021 - Taylor & Francis
Introduction: Drug repurposing provides a cost-effective strategy to re-use approved drugs
for new medical indications. Several machine learning (ML) and artificial intelligence (AI) …

Representation of genomic intratumor heterogeneity in multi-region non-small cell lung cancer patient-derived xenograft models

RE Hynds, A Huebner, DR Pearce, MS Hill… - Nature …, 2024 - nature.com
Patient-derived xenograft (PDX) models are widely used in cancer research. To investigate
the genomic fidelity of non-small cell lung cancer PDX models, we established 48 PDX …

[HTML][HTML] Machine learning in the prediction of cancer therapy

R Rafique, SMR Islam, JU Kazi - Computational and Structural …, 2021 - Elsevier
Resistance to therapy remains a major cause of cancer treatment failures, resulting in many
cancer-related deaths. Resistance can occur at any time during the treatment, even at the …

Conservation of copy number profiles during engraftment and passaging of patient-derived cancer xenografts

XY Woo, J Giordano, A Srivastava, ZM Zhao… - Nature …, 2021 - nature.com
Patient-derived xenografts (PDXs) are resected human tumors engrafted into mice for
preclinical studies and therapeutic testing. It has been proposed that the mouse host affects …

Capturing heterogeneity in PDX models: representation matters

HS Sunil, KA O'Donnell - nature communications, 2024 - nature.com
Patient derived tumor xenografts (PDXs) are important models for pre-clinical testing in
cancer research and personalized medicine. PDXs often represent patient tumors with high …

NRF2 and FXR dual signaling pathways cooperatively regulate the effects of oleanolic acid on cholestatic liver injury

J Liu, J Liu, C Meng, Q Gu, C Huang, F Liu, C **a - Phytomedicine, 2023 - Elsevier
Background Previous studies have shown that the anti-cholestatic effect of oleanolic acid
(OA) is associated with FXR and NRF2. However, how the two signaling pathways …

CTR-DB, an omnibus for patient-derived gene expression signatures correlated with cancer drug response

Z Liu, J Liu, X Liu, X Wang, Q **e, X Zhang… - Nucleic acids …, 2022 - academic.oup.com
To date, only some cancer patients can benefit from chemotherapy and targeted therapy.
Drug resistance continues to be a major and challenging problem facing current cancer …