Mechanisms of lncRNA biogenesis as revealed by nascent transcriptomics
Mammalian genomes express two principal gene categories through RNA polymerase II-
mediated transcription: protein-coding transcription units and non-coding RNA transcription …
mediated transcription: protein-coding transcription units and non-coding RNA transcription …
[LLIBRE][B] RNA, the epicenter of genetic information
The origin story and emergence of molecular biology is muddled. The early triumphs in
bacterial genetics and the complexity of animal and plant genomes complicate an intricate …
bacterial genetics and the complexity of animal and plant genomes complicate an intricate …
Enhancers are activated by p300/CBP activity-dependent PIC assembly, RNAPII recruitment, and pause release
T Narita, S Ito, Y Higashijima, WK Chu, K Neumann… - Molecular Cell, 2021 - cell.com
The metazoan-specific acetyltransferase p300/CBP is involved in activating signal-induced,
enhancer-mediated transcription of cell-type-specific genes. However, the global kinetics …
enhancer-mediated transcription of cell-type-specific genes. However, the global kinetics …
MLL-AF4 cooperates with PAF1 and FACT to drive high-density enhancer interactions in leukemia
NT Crump, AL Smith, L Godfrey… - Nature …, 2023 - nature.com
Aberrant enhancer activation is a key mechanism driving oncogene expression in many
cancers. While much is known about the regulation of larger chromosome domains in …
cancers. While much is known about the regulation of larger chromosome domains in …
Cohesin couples transcriptional bursting probabilities of inducible enhancers and promoters
I Robles-Rebollo, S Cuartero… - Nature …, 2022 - nature.com
Innate immune responses rely on inducible gene expression programmes which, in contrast
to steady-state transcription, are highly dependent on cohesin. Here we address …
to steady-state transcription, are highly dependent on cohesin. Here we address …
Capture-C: a modular and flexible approach for high-resolution chromosome conformation capture
Chromosome conformation capture (3C) methods measure the spatial proximity between
DNA elements in the cell nucleus. Many methods have been developed to sample 3C …
DNA elements in the cell nucleus. Many methods have been developed to sample 3C …
[HTML][HTML] Loss-of-Function Variants in SUPT5H as Modifying Factors in Beta-Thalassemia
CL Harteveld, A Achour… - International Journal of …, 2024 - mdpi.com
It is well known that modifiers play a role in ameliorating or exacerbating disease
phenotypes in patients and carriers of recessively inherited disorders such as sickle cell …
phenotypes in patients and carriers of recessively inherited disorders such as sickle cell …
Differences in transcription initiation directionality underlie distinctions between plants and animals in chromatin modification patterns at genes and cis-regulatory …
BD Silver, CG Willett, KA Maher… - G3: Genes, Genomes …, 2024 - academic.oup.com
Transcriptional initiation is among the first regulated steps controlling eukaryotic gene
expression. High-throughput profiling of fungal and animal genomes has revealed that RNA …
expression. High-throughput profiling of fungal and animal genomes has revealed that RNA …
Promoter-proximal RNA polymerase II termination regulates transcription during human cell type transition
Metazoan gene transcription by RNA polymerase II (Pol II) is regulated in the promoter-
proximal region. Pol II can undergo termination in the promoter-proximal region but whether …
proximal region. Pol II can undergo termination in the promoter-proximal region but whether …
Enhancers are genes that express organizational RNAs
JS Mattick - Frontiers in RNA Research, 2023 - frontiersin.org
A longstanding enigma in molecular biology is the lack of scaling of protein-coding genes
with developmental complexity, referred to as the g-value paradox. On the other hand, a …
with developmental complexity, referred to as the g-value paradox. On the other hand, a …