Learning with limited annotations: a survey on deep semi-supervised learning for medical image segmentation
Medical image segmentation is a fundamental and critical step in many image-guided
clinical approaches. Recent success of deep learning-based segmentation methods usually …
clinical approaches. Recent success of deep learning-based segmentation methods usually …
Astrocyte morphology
KT Baldwin, KK Murai, BS Khakh - Trends in cell biology, 2024 - cell.com
Astrocytes are predominant glial cells that tile the central nervous system (CNS). A cardinal
feature of astrocytes is their complex and visually enchanting morphology, referred to as …
feature of astrocytes is their complex and visually enchanting morphology, referred to as …
Whole-cell organelle segmentation in volume electron microscopy
Cells contain hundreds of organelles and macromolecular assemblies. Obtaining a
complete understanding of their intricate organization requires the nanometre-level, three …
complete understanding of their intricate organization requires the nanometre-level, three …
A connectome and analysis of the adult Drosophila central brain
The neural circuits responsible for animal behavior remain largely unknown. We summarize
new methods and present the circuitry of a large fraction of the brain of the fruit fly …
new methods and present the circuitry of a large fraction of the brain of the fruit fly …
A connectomic study of a petascale fragment of human cerebral cortex
We acquired a rapidly preserved human surgical sample from the temporal lobe of the
cerebral cortex. We stained a 1 mm3 volume with heavy metals, embedded it in resin, cut …
cerebral cortex. We stained a 1 mm3 volume with heavy metals, embedded it in resin, cut …
Whole-animal connectomes of both Caenorhabditis elegans sexes
Abstract Knowledge of connectivity in the nervous system is essential to understanding its
function. Here we describe connectomes for both adult sexes of the nematode …
function. Here we describe connectomes for both adult sexes of the nematode …
[HTML][HTML] Reconstruction of neocortex: Organelles, compartments, cells, circuits, and activity
We assembled a semi-automated reconstruction of L2/3 mouse primary visual cortex from∼
250× 140× 90 μm 3 of electron microscopic images, including pyramidal and non-pyramidal …
250× 140× 90 μm 3 of electron microscopic images, including pyramidal and non-pyramidal …
Quantitative magnetic resonance imaging of brain anatomy and in vivo histology
Quantitative magnetic resonance imaging (qMRI) goes beyond conventional MRI, which
aims primarily at local image contrast. It provides specific physical parameters related to the …
aims primarily at local image contrast. It provides specific physical parameters related to the …
Connectomes across development reveal principles of brain maturation
An animal's nervous system changes as its body grows from birth to adulthood and its
behaviours mature,,,,,,–. The form and extent of circuit remodelling across the connectome is …
behaviours mature,,,,,,–. The form and extent of circuit remodelling across the connectome is …
The emerging nature of astrocyte diversity
BS Khakh, B Deneen - Annual review of neuroscience, 2019 - annualreviews.org
Astrocytes are morphologically complex, ubiquitous cells that are viewed as a
homogeneous population tiling the entire central nervous system (CNS). However, this view …
homogeneous population tiling the entire central nervous system (CNS). However, this view …