Genomic selection in plant breeding: Key factors sha** two decades of progress

A Alemu, J Åstrand, OA Montesinos-Lopez… - Molecular Plant, 2024 - cell.com
Genomic selection, the application of genomic prediction (GP) models to select candidate
individuals, has significantly advanced in the past two decades, effectively accelerating …

Genomic selection in plant breeding: methods, models, and perspectives

J Crossa, P Pérez-Rodríguez, J Cuevas… - Trends in plant …, 2017 - cell.com
Genomic selection (GS) facilitates the rapid selection of superior genotypes and accelerates
the breeding cycle. In this review, we discuss the history, principles, and basis of GS and …

DNNGP, a deep neural network-based method for genomic prediction using multi-omics data in plants

K Wang, MA Abid, A Rasheed, J Crossa, S Hearne… - Molecular Plant, 2023 - cell.com
Genomic prediction is an effective way to accelerate the rate of agronomic trait improvement
in plants. Traditional methods typically use linear regression models with clear assumptions; …

Genomic selection: A tool for accelerating the efficiency of molecular breeding for development of climate-resilient crops

N Budhlakoti, AK Kushwaha, A Rai… - Frontiers in …, 2022 - frontiersin.org
Since the inception of the theory and conceptual framework of genomic selection (GS),
extensive research has been done on evaluating its efficiency for utilization in crop …

Genome-Assisted Prediction of Quantitative Traits Using the R Package sommer

G Covarrubias-Pazaran - PloS one, 2016 - journals.plos.org
Most traits of agronomic importance are quantitative in nature, and genetic markers have
been used for decades to dissect such traits. Recently, genomic selection has earned …

Beat the stress: breeding for climate resilience in maize for the tropical rainfed environments

BM Prasanna, JE Cairns, PH Zaidi, Y Beyene… - Theoretical and Applied …, 2021 - Springer
Key message Intensive public sector breeding efforts and public-private partnerships have
led to the increase in genetic gains, and deployment of elite climate-resilient maize cultivars …

Genome-wide regression and prediction with the BGLR statistical package

P Pérez, G de Los Campos - Genetics, 2014 - academic.oup.com
Many modern genomic data analyses require implementing regressions where the number
of parameters (p, eg, the number of marker effects) exceeds sample size (n). Implementing …

Genomic Selection in the Era of Next Generation Sequencing for Complex Traits in Plant Breeding

JA Bhat, S Ali, RK Salgotra, ZA Mir, S Dutta… - Frontiers in …, 2016 - frontiersin.org
Genomic selection (GS) is a promising approach exploiting molecular genetic markers to
design novel breeding programs and to develop new markers-based models for genetic …

Genomic selection: genome-wide prediction in plant improvement

ZA Desta, R Ortiz - Trends in plant science, 2014 - cell.com
Association analysis is used to measure relations between markers and quantitative trait loci
(QTL). Their estimation ignores genes with small effects that trigger underpinning …

Genomic Selection and Association Map** in Rice (Oryza sativa): Effect of Trait Genetic Architecture, Training Population Composition, Marker Number and …

J Spindel, H Begum, D Akdemir, P Virk, B Collard… - PLoS …, 2015 - journals.plos.org
Genomic Selection (GS) is a new breeding method in which genome-wide markers are used
to predict the breeding value of individuals in a breeding population. GS has been shown to …