High-throughput and single-cell T cell receptor sequencing technologies

JA Pai, AT Satpathy - Nature methods, 2021 - nature.com
T cells express T cell receptors (TCRs) composed of somatically recombined TCRα and
TCRβ chains, which mediate recognition of major histocompatibility complex (MHC)–antigen …

The dormant cancer cell life cycle

TG Phan, PI Croucher - Nature Reviews Cancer, 2020 - nature.com
The success of targeted therapies and immunotherapies has created optimism that cancers
may be curable. However, not all patients respond, drug resistance is common and many …

Orchestrating single-cell analysis with Bioconductor

RA Amezquita, ATL Lun, E Becht, VJ Carey… - Nature …, 2020 - nature.com
Recent technological advancements have enabled the profiling of a large number of
genome-wide features in individual cells. However, single-cell data present unique …

Immunosenescence and human vaccine immune responses

SN Crooke, IG Ovsyannikova, GA Poland… - Immunity & …, 2019 - Springer
The age-related dysregulation and decline of the immune system—collectively termed
“immunosenescence”—has been generally associated with an increased susceptibility to …

CellTalkDB: a manually curated database of ligand–receptor interactions in humans and mice

X Shao, J Liao, C Li, X Lu, J Cheng… - Briefings in …, 2021 - academic.oup.com
Cell–cell communications in multicellular organisms generally involve secreted ligand–
receptor (LR) interactions, which is vital for various biological phenomena. Recent …

The single-cell sequencing: new developments and medical applications

X Tang, Y Huang, J Lei, H Luo, X Zhu - Cell & bioscience, 2019 - Springer
Single-cell sequencing technologies can be used to detect the genome, transcriptome and
other multi-omics of single cells. They can show the differences and evolutionary …

The tumour microenvironment shapes innate lymphoid cells in patients with hepatocellular carcinoma

B Heinrich, EM Gertz, AA Schäffer, A Craig, B Ruf… - Gut, 2022 - gut.bmj.com
Objective Hepatocellular carcinoma (HCC) represents a typical inflammation-associated
cancer. Tissue resident innate lymphoid cells (ILCs) have been suggested to control tumour …

Data denoising with transfer learning in single-cell transcriptomics

J Wang, D Agarwal, M Huang, G Hu, Z Zhou, C Ye… - Nature …, 2019 - nature.com
Single-cell RNA sequencing (scRNA-seq) data are noisy and sparse. Here, we show that
transfer learning across datasets remarkably improves data quality. By coupling a deep …

Recent advances in single cell manipulation and biochemical analysis on microfluidics

D Gao, F **, M Zhou, Y Jiang - Analyst, 2019 - pubs.rsc.org
Single cell analysis has become of great interest with unprecedented capabilities for the
systematic investigation of cell-to-cell variation in large populations. Rapid and multi …

A niche-dependent myeloid transcriptome signature defines dormant myeloma cells

WH Khoo, G Ledergor, A Weiner… - Blood, The Journal …, 2019 - ashpublications.org
The era of targeted therapies has seen significant improvements in depth of response,
progression-free survival, and overall survival for patients with multiple myeloma. Despite …